Variant report

Variant	rs612162
Chromosome Location	chr11:67312357-67312358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr11:67312268-67312448	Hela-S3	cervix:	n/a	n/a
2	TCF7L2	chr11:67312195-67312505	PANC-1	pancreas:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:67310074..67312796-chr11:67395980..67398997,3	K562	blood:
2	chr11:67294127..67296248-chr11:67310062..67312505,2	MCF-7	breast:
3	chr11:67306648..67309517-chr11:67310700..67312704,2	K562	blood:
4	chr11:67272876..67275672-chr11:67310253..67312685,2	K562	blood:

Variant related genes	Relation type
RN7SL59P	TF binding region
ENSG00000110697	Chromatin interaction
ENSG00000244152	Chromatin interaction
ENSG00000167797	Chromatin interaction
ENSG00000167799	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11227848	0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1254125	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1254130	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1871041	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2169650	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2509725	1.00[ASW][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs34743590	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4930204	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4930443	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs584338	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs593055	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs594784	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs595262	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598398	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs601531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs604232	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs604908	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs615260	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs615270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs627449	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs628770	0.87[AFR][1000 genomes]
rs629952	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641544	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs643317	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs644670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs649149	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs655848	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs656798	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6591246	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6591247	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs661624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs667014	0.82[ASN][1000 genomes]
rs669956	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs675679	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs676653	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs685032	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs687058	0.87[YRI][hapmap]
rs687316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs689317	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs694616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128347	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7927381	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
4	nsv897807	chr11:67155210-67414492	Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
5	nsv897808	chr11:67155210-67419855	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
6	nsv534229	chr11:67164667-67411909	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
7	esv2422195	chr11:67234322-67626901	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs612162	GSTP1	cis	multi-tissue	Pritchard

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67307000-67312400	Weak transcription	Esophagus	oesophagus
2	chr11:67307600-67312400	Weak transcription	Spleen	Spleen
3	chr11:67309600-67314600	Enhancers	Dnd41	blood
4	chr11:67309800-67312800	Enhancers	Fetal Muscle Trunk	muscle
5	chr11:67310400-67312400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr11:67310400-67313200	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:67310600-67312400	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr11:67310800-67314400	Enhancers	Colonic Mucosa	Colon
9	chr11:67310800-67314800	Enhancers	Pancreas	Pancrea
10	chr11:67311000-67313200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:67311200-67312600	Weak transcription	Ovary	ovary
12	chr11:67311200-67312800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:67311200-67313200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr11:67311400-67313800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:67311600-67312600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:67311600-67313200	Enhancers	Fetal Intestine Large	intestine
17	chr11:67311800-67312800	Enhancers	Hela-S3	cervix
18	chr11:67311800-67314600	Enhancers	Fetal Intestine Small	intestine
19	chr11:67312000-67312800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:67312000-67312800	Enhancers	Fetal Muscle Leg	muscle
21	chr11:67312000-67312800	Enhancers	A549	lung
22	chr11:67312000-67313400	Enhancers	Fetal Heart	heart
23	chr11:67312200-67312400	Enhancers	Adipose Nuclei	Adipose
24	chr11:67312200-67312400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
25	chr11:67312200-67312600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:67312200-67312800	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr11:67312200-67312800	Enhancers	Fetal Kidney	kidney
28	chr11:67312200-67312800	Flanking Active TSS	HepG2	liver
29	chr11:67312200-67313000	Enhancers	Left Ventricle	heart
30	chr11:67312200-67313000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
31	chr11:67312200-67313000	Enhancers	HSMMtube	muscle
32	chr11:67312200-67313200	Enhancers	Liver	Liver
33	chr11:67312200-67313200	Enhancers	Right Atrium	heart
34	chr11:67312200-67313200	Enhancers	Right Ventricle	heart
35	chr11:67312200-67313200	Enhancers	Stomach Mucosa	stomach
36	chr11:67312200-67313200	Enhancers	K562	blood

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