Variant report

Variant	rs61219982
Chromosome Location	chr7:50483762-50483763
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11575569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73695568	1.00[AMR][1000 genomes]
rs73695662	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv515738	chr7:50476109-50494207	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50470600-50485600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr7:50472200-50483800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:50472400-50486400	Enhancers	Primary B cells from peripheral blood	blood
4	chr7:50475400-50483800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:50478800-50483800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:50481400-50486000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:50481600-50486200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:50482800-50483800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr7:50482800-50485600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr7:50483000-50485600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr7:50483000-50486400	Enhancers	Thymus	Thymus
12	chr7:50483000-50486800	Enhancers	Fetal Thymus	thymus
13	chr7:50483200-50484000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr7:50483200-50484000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:50483200-50484200	Enhancers	Placenta	Placenta
16	chr7:50483200-50484200	Enhancers	GM12878-XiMat	blood
17	chr7:50483200-50484400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:50483200-50485400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:50483200-50486200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr7:50483400-50485000	Enhancers	Spleen	Spleen
21	chr7:50483400-50485200	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr7:50483400-50485600	Enhancers	Primary T cells from cord blood	blood
23	chr7:50483400-50485600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr7:50483400-50486200	Enhancers	Primary T cells fromperipheralblood	blood
25	chr7:50483400-50486200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr7:50483400-50488800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr7:50483600-50483800	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr7:50483600-50484000	Enhancers	Adipose Nuclei	Adipose
29	chr7:50483600-50484200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:50483600-50484400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:50483600-50484600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr7:50483600-50485200	Enhancers	Duodenum Mucosa	Duodenum
33	chr7:50483600-50485600	Enhancers	Primary hematopoietic stem cells	blood
34	chr7:50483600-50485600	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links