Variant report

Variant	rs61229408
Chromosome Location	chr15:75046784-75046785
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34983171	0.81[AFR][1000 genomes]
rs45607039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57649132	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60001770	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75043800-75051200	Weak transcription	HepG2	liver
2	chr15:75044800-75047000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:75044800-75062600	Weak transcription	Right Atrium	heart
4	chr15:75045400-75047600	Strong transcription	Liver	Liver
5	chr15:75045600-75046800	Weak transcription	Fetal Kidney	kidney
6	chr15:75045600-75047200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:75045600-75047200	Weak transcription	Lung	lung
8	chr15:75045600-75053600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:75045800-75047000	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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