Variant report
| Variant | rs61231237 |
|---|---|
| Chromosome Location | chr5:120685725-120685726 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:120684041..120685887-chr5:120689318..120691883,2 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FTMT-2 | chr5:120685681-120686145 | ENSG00000229855.4 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs11948148 | 0.87[AFR][1000 genomes] |
| rs11956004 | 0.87[AFR][1000 genomes] |
| rs11956670 | 0.87[AFR][1000 genomes] |
| rs59768572 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73270223 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73270233 | 0.87[AFR][1000 genomes] |
| rs73270237 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73270239 | 0.87[AFR][1000 genomes] |
| rs73270244 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73270246 | 0.84[AFR][1000 genomes] |
| rs73270248 | 0.84[AFR][1000 genomes] |
| rs73277927 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73277931 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73283841 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73283852 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73283855 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73283887 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73285490 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv599606 | chr5:120219340-120776767 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv882797 | chr5:120359319-120757262 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv33642 | chr5:120380525-120848760 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv2754268 | chr5:120398198-120745053 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1022981 | chr5:120583543-120691755 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv2763911 | chr5:120583555-120706241 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv518883 | chr5:120591425-120708748 | Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
