Variant report
| Variant | rs61239202 |
|---|---|
| Chromosome Location | chr3:151180990-151180991 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT1 | chr3:151180043-151181120 | Hela-S3 | cervix: | n/a | n/a |
| 2 | CEBPB | chr3:151180987-151181187 | K562 | blood: | n/a | n/a |
| 3 | FOS | chr3:151180689-151181166 | Hela-S3 | cervix: | n/a | chr3:151181034-151181042 chr3:151180877-151180886 chr3:151181035-151181042 chr3:151181034-151181042 |
| 4 | CEBPB | chr3:151180990-151181277 | Hela-S3 | cervix: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| IGSF10 | TF binding region |
| ENSG00000152580 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs16863403 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs62284461 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs62284462 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs62284465 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6793154 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829757 | chr3:151044880-151226442 | Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1000355 | chr3:151108859-151243835 | Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv995048 | chr3:151114074-151560019 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv877649 | chr3:151147968-151236562 | Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv877650 | chr3:151174010-151314449 | Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:151179200-151194200 | Weak transcription | Ovary | ovary |
