Variant report
| Variant | rs6124468 |
|---|---|
| Chromosome Location | chr20:41128954-41128955 |
| allele | A/C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs1157347 | 1.00[CHB][hapmap] |
| rs13040647 | 1.00[CHB][hapmap] |
| rs13040814 | 1.00[CHB][hapmap] |
| rs13045506 | 1.00[CHB][hapmap] |
| rs1555161 | 1.00[CHB][hapmap] |
| rs1555162 | 1.00[CHB][hapmap] |
| rs16987042 | 1.00[CHB][hapmap];0.82[TSI][hapmap] |
| rs2205944 | 1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap] |
| rs2273072 | 1.00[CHB][hapmap] |
| rs4327285 | 1.00[CHB][hapmap] |
| rs4482557 | 1.00[CHB][hapmap] |
| rs6030304 | 1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6030311 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6030328 | 1.00[CHB][hapmap] |
| rs6102934 | 1.00[CHB][hapmap] |
| rs6102935 | 1.00[CHB][hapmap] |
| rs6102938 | 1.00[CHB][hapmap] |
| rs6102939 | 1.00[CHB][hapmap] |
| rs6102940 | 1.00[CHB][hapmap] |
| rs6102941 | 1.00[CHB][hapmap] |
| rs6102942 | 1.00[CHB][hapmap] |
| rs6102943 | 1.00[CHB][hapmap] |
| rs6102944 | 1.00[CHB][hapmap] |
| rs6102945 | 1.00[CHB][hapmap] |
| rs6102946 | 1.00[CHB][hapmap] |
| rs6102947 | 1.00[CHB][hapmap] |
| rs6102948 | 1.00[CHB][hapmap] |
| rs6102949 | 1.00[CHB][hapmap] |
| rs6124466 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6130153 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap] |
| rs6130154 | 1.00[CEU][hapmap] |
| rs6130158 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7263077 | 1.00[CHB][hapmap] |
| rs7269218 | 1.00[CHB][hapmap] |
| rs8119342 | 1.00[CHB][hapmap] |
| rs877440 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751913 | chr20:40422982-41269321 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv833987 | chr20:41007663-41184914 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers | Chromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1059852 | chr20:41087948-41217672 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv544276 | chr20:41087948-41217672 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv1055546 | chr20:41102999-41260749 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | esv1807209 | chr20:41107678-41154898 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 7 | nsv1064253 | chr20:41120425-41379706 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 8 | nsv1061449 | chr20:41126720-41212178 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
