Variant report

Variant	rs61246147
Chromosome Location	chr6:144317962-144317963
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11751745	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11756447	1.00[EUR][1000 genomes]
rs11756507	0.83[ASN][1000 genomes]
rs11758403	1.00[EUR][1000 genomes]
rs11759546	1.00[EUR][1000 genomes]
rs2268446	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2268449	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57276127	1.00[EUR][1000 genomes]
rs57728555	0.83[ASN][1000 genomes]
rs57970734	0.83[ASN][1000 genomes]
rs59148328	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59834373	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61313540	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv5516	chr6:144300321-144345812	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144284800-144318400	Weak transcription	Aorta	Aorta
2	chr6:144305000-144327400	Weak transcription	Fetal Kidney	kidney
3	chr6:144305000-144327400	Weak transcription	Fetal Lung	lung
4	chr6:144306600-144327400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:144309000-144327400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:144310000-144327200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:144310400-144320400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:144312800-144327400	Weak transcription	Left Ventricle	heart
9	chr6:144315200-144322800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:144315600-144321000	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:144315800-144320000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:144315800-144327200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:144316000-144320600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:144317200-144318000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:144317600-144327400	Weak transcription	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links