Variant report

Variant	rs61249140
Chromosome Location	chr6:106567415-106567416
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:106557782..106560621-chr6:106566245..106567959,2	MCF-7	breast:
2	chr6:106565935..106568775-chr6:106582626..106585270,2	MCF-7	breast:
3	chr6:106558728..106560776-chr6:106566123..106570070,3	K562	blood:
4	chr6:106567410..106567924-chr6:106582600..106583313,2	MCF-7	breast:
5	chr6:106562714..106568673-chr6:106569146..106572965,6	K562	blood:
6	chr6:106566135..106570137-chr6:106580831..106586138,5	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11969705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2235267	1.00[EUR][1000 genomes]
rs58540441	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60890632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568429	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6910707	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6921527	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6921649	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73772595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73772598	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73772600	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73772602	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7742618	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752226	0.96[ASN][1000 genomes]
rs7759930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774260	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9480642	0.94[ASN][1000 genomes]
rs9480643	0.92[ASN][1000 genomes]
rs9480644	0.86[ASN][1000 genomes]
rs9486284	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1025231	chr6:106451012-106634389	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv830755	chr6:106461705-106624202	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1025900	chr6:106529777-106898421	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1018270	chr6:106531658-106908606	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv538399	chr6:106531658-106908606	Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	esv1832544	chr6:106539914-106642993	Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1035110	chr6:106557281-106802212	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv538400	chr6:106557281-106802212	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106553600-106584000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:106559200-106574200	Weak transcription	Small Intestine	intestine
3	chr6:106560200-106567800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:106563200-106567600	Enhancers	Primary T cells fromperipheralblood	blood
5	chr6:106564400-106567800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:106564600-106568000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:106564800-106567800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:106565800-106567800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:106565800-106572600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:106566400-106567600	ZNF genes & repeats	GM12878-XiMat	blood
11	chr6:106566600-106568800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr6:106566600-106570000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:106566800-106567600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:106566800-106567800	Enhancers	HMEC	breast
15	chr6:106566800-106568000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:106566800-106568200	Enhancers	Hela-S3	cervix
17	chr6:106566800-106568600	Enhancers	NHDF-Ad	bronchial
18	chr6:106567000-106567600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr6:106567000-106567600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:106567000-106567800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:106567000-106568200	Enhancers	NHEK	skin
22	chr6:106567000-106568400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr6:106567000-106568600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:106567000-106568600	Enhancers	HSMMtube	muscle
25	chr6:106567000-106568800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:106567200-106567800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:106567200-106568000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:106567200-106568200	Enhancers	Fetal Intestine Large	intestine
29	chr6:106567200-106568400	Enhancers	Fetal Heart	heart
30	chr6:106567200-106568400	Weak transcription	Placenta	Placenta
31	chr6:106567200-106573800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:106567400-106567600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:106567400-106567600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:106567400-106567600	Enhancers	Esophagus	oesophagus
35	chr6:106567400-106567800	Enhancers	H9 Cell Line	embryonic stem cell
36	chr6:106567400-106567800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:106567400-106567800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:106567400-106567800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr6:106567400-106568000	Enhancers	HSMM	muscle
40	chr6:106567400-106568200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:106567400-106568600	Enhancers	Fetal Intestine Small	intestine
42	chr6:106567400-106572800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:106567400-106573400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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