Variant report

Variant	rs61250936
Chromosome Location	chr3:191135069-191135070
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:191134537..191135165-chr3:191527181..191527753,2	MCF-7	breast:
2	chr3:191134523..191135475-chr3:192162485..192163000,2	K562	blood:
3	chr3:191134775..191135412-chr3:191930109..191930662,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11542549	0.85[ASN][1000 genomes]
rs1435062	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1473869	0.88[EUR][1000 genomes]
rs1520202	0.82[EUR][1000 genomes]
rs1520203	0.82[ASN][1000 genomes]
rs1609926	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16822378	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16822382	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16866487	0.88[EUR][1000 genomes]
rs16866504	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16866505	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17753967	0.90[ASN][1000 genomes]
rs17810246	0.90[ASN][1000 genomes]
rs17810282	0.90[ASN][1000 genomes]
rs184141	0.82[AFR][1000 genomes]
rs2056333	0.88[EUR][1000 genomes]
rs2364379	0.81[ASN][1000 genomes]
rs28715898	0.90[ASN][1000 genomes]
rs293853	0.82[AFR][1000 genomes]
rs366757	0.84[AFR][1000 genomes]
rs3796219	0.82[EUR][1000 genomes]
rs385582	0.82[AFR][1000 genomes]
rs3959143	0.94[ASN][1000 genomes]
rs4677631	0.90[ASN][1000 genomes]
rs4677632	0.90[ASN][1000 genomes]
rs4677725	0.90[ASN][1000 genomes]
rs4677726	0.90[ASN][1000 genomes]
rs4677727	0.90[ASN][1000 genomes]
rs542437	0.85[AFR][1000 genomes]
rs56174842	0.88[EUR][1000 genomes]
rs57211729	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58141749	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58645265	0.85[ASN][1000 genomes]
rs59709586	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6444541	0.88[ASN][1000 genomes]
rs697909	0.82[AFR][1000 genomes]
rs73185209	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73185210	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73185213	0.85[ASN][1000 genomes]
rs73185226	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73185228	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73185240	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73185255	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73185263	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73185284	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73185287	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73185288	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73201627	0.82[EUR][1000 genomes]
rs73201628	0.88[EUR][1000 genomes]
rs73201630	0.88[EUR][1000 genomes]
rs73201631	0.88[EUR][1000 genomes]
rs7637196	0.90[ASN][1000 genomes]
rs7642387	0.90[ASN][1000 genomes]
rs7648886	0.90[ASN][1000 genomes]
rs9290986	0.90[ASN][1000 genomes]
rs9823680	0.90[ASN][1000 genomes]
rs9824437	0.90[ASN][1000 genomes]
rs9839751	0.87[ASN][1000 genomes]
rs9843934	0.90[ASN][1000 genomes]
rs9853569	0.90[ASN][1000 genomes]
rs9863255	0.88[ASN][1000 genomes]
rs9876944	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931943	chr3:190860224-191321873	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2757910	chr3:190867011-191279107	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759209	chr3:190867011-191279107	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv428428	chr3:190936834-191215596	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv998208	chr3:191021434-191175350	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv534269	chr3:191037181-191261730	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191129400-191135200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:191134600-191135400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:191134600-191135400	Enhancers	Fetal Heart	heart
4	chr3:191135000-191135200	Active TSS	Liver	Liver
5	chr3:191135000-191135200	Enhancers	Fetal Kidney	kidney
6	chr3:191135000-191135400	Enhancers	HUES6 Cell Line	embryonic stem cell

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