Variant report

Variant	rs61250961
Chromosome Location	chr6:38496196-38496197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10498741	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17542411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60995541	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv10306	chr6:38495659-38504443	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38444600-38496200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:38452400-38496600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:38476600-38499800	Weak transcription	Pancreas	Pancrea
4	chr6:38476800-38498800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:38477800-38498400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:38479000-38509800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:38485200-38496200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:38485400-38500400	Weak transcription	Gastric	stomach
9	chr6:38487000-38518600	Weak transcription	Primary T cells from cord blood	blood
10	chr6:38487800-38502600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:38489000-38501000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:38490200-38499600	Weak transcription	Brain Angular Gyrus	brain
13	chr6:38490400-38497800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:38490600-38496200	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:38490600-38503400	Weak transcription	Fetal Lung	lung
16	chr6:38492800-38508000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:38493400-38496400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:38493600-38498600	ZNF genes & repeats	Fetal Intestine Small	intestine
19	chr6:38494200-38497200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:38494200-38499600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:38494200-38499800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:38494400-38496400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:38494400-38496600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:38494400-38497600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:38494400-38499800	Weak transcription	Left Ventricle	heart
26	chr6:38494400-38499800	Weak transcription	Spleen	Spleen
27	chr6:38494400-38500200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:38494400-38513800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr6:38494400-38515400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:38494400-38518800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:38494400-38524200	Weak transcription	Aorta	Aorta
32	chr6:38494600-38497200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr6:38494800-38499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr6:38494800-38522600	Weak transcription	Ovary	ovary
35	chr6:38495000-38521800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:38495800-38496200	Enhancers	NH-A	brain
37	chr6:38495800-38496600	Strong transcription	Fetal Stomach	stomach
38	chr6:38495800-38496800	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr6:38496000-38496400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:38496000-38496400	Enhancers	Right Ventricle	heart
41	chr6:38496000-38496400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
42	chr6:38496000-38496800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:38496000-38496800	Strong transcription	Lung	lung
44	chr6:38496000-38497000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:38496000-38502400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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