Variant report

Variant	rs61263021
Chromosome Location	chr1:84667015-84667016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28730698	1.00[AFR][1000 genomes]
rs57960746	1.00[AFR][1000 genomes]
rs58384983	0.86[AFR][1000 genomes]
rs7513220	0.86[AFR][1000 genomes]
rs7526584	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546689	chr1:84531117-84670816	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv871656	chr1:84601048-84693671	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv997601	chr1:84609346-84672859	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1005225	chr1:84609871-84667950	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv999772	chr1:84611207-84667218	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1013911	chr1:84619164-84667950	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv871375	chr1:84622793-84678418	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv871643	chr1:84628655-84705481	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv871538	chr1:84633116-84717983	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv830414	chr1:84636738-84824651	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
11	nsv1011105	chr1:84638386-84674276	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv1837139	chr1:84649799-84670584	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84652200-84675000	Weak transcription	Pancreas	Pancrea
2	chr1:84652400-84689800	Weak transcription	Aorta	Aorta
3	chr1:84653400-84674800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:84657600-84708000	Weak transcription	Left Ventricle	heart
5	chr1:84658400-84667600	Weak transcription	NHDF-Ad	bronchial
6	chr1:84659000-84672000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:84659000-84674600	Weak transcription	Osteobl	bone
8	chr1:84659000-84685000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr1:84659000-84700600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr1:84659000-84700800	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:84659200-84677000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:84659200-84688400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:84659400-84668000	Strong transcription	Fetal Thymus	thymus
14	chr1:84659400-84670400	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr1:84659400-84672000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:84659400-84675200	Strong transcription	Dnd41	blood
17	chr1:84659400-84677200	Weak transcription	Psoas Muscle	Psoas
18	chr1:84659400-84685400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr1:84659600-84672000	Weak transcription	HMEC	breast
20	chr1:84659600-84673600	Weak transcription	Placenta	Placenta
21	chr1:84659600-84675000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:84659800-84667400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:84659800-84701400	Weak transcription	NHLF	lung
24	chr1:84660200-84672400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:84660400-84674400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr1:84660600-84683200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:84660600-84686200	Weak transcription	Fetal Intestine Small	intestine
28	chr1:84660800-84688400	Weak transcription	Fetal Brain Male	brain
29	chr1:84661400-84670200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr1:84661800-84671600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr1:84662000-84667800	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr1:84662600-84673400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr1:84663000-84670400	Weak transcription	Fetal Heart	heart
34	chr1:84663200-84671600	Weak transcription	HSMM	muscle
35	chr1:84663200-84684600	Weak transcription	Hela-S3	cervix
36	chr1:84663600-84668200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
37	chr1:84665200-84668400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr1:84665200-84669000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr1:84665200-84671400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr1:84665200-84672000	Weak transcription	Fetal Intestine Large	intestine
41	chr1:84665200-84672200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr1:84665200-84700800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr1:84665400-84667600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr1:84665400-84667800	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr1:84665400-84669000	Weak transcription	Brain Angular Gyrus	brain
46	chr1:84665400-84669000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr1:84665400-84669000	Weak transcription	Brain Substantia Nigra	brain
48	chr1:84665400-84669200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr1:84665400-84671800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:84665400-84671800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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