Variant report

Variant	rs61269477
Chromosome Location	chr10:45469142-45469143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45442718..45444232-chr10:45467688..45470115,2	MCF-7	breast:
2	chr10:45425100..45428084-chr10:45468881..45470918,3	K562	blood:
3	chr10:45466696..45473467-chr10:45492241..45499604,15	K562	blood:
4	chr10:45468966..45470548-chr10:45472555..45474285,2	MCF-7	breast:
5	chr10:45463326..45466308-chr10:45468045..45470693,6	MCF-7	breast:
6	chr10:45467811..45472693-chr10:45495081..45499604,7	K562	blood:

Variant related genes	Relation type
ENSG00000165511	Chromatin interaction
ENSG00000165512	Chromatin interaction
ENSG00000187783	Chromatin interaction
ENSG00000107551	Chromatin interaction
ENSG00000165507	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11239299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239305	1.00[AMR][1000 genomes]
rs11239306	1.00[AMR][1000 genomes]
rs11239307	1.00[AMR][1000 genomes]
rs11239308	1.00[AMR][1000 genomes]
rs11239309	1.00[AMR][1000 genomes]
rs12359954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2274888	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35521977	1.00[AMR][1000 genomes]
rs3758399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3758400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41301599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41301601	1.00[AMR][1000 genomes]
rs41301611	1.00[AMR][1000 genomes]
rs41306544	1.00[AMR][1000 genomes]
rs41306546	1.00[AMR][1000 genomes]
rs59381196	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv526734	chr10:45458485-45492054	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45460000-45470000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:45460400-45469800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:45462000-45469800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:45462800-45469600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:45464200-45469400	Weak transcription	NHDF-Ad	bronchial
6	chr10:45464200-45469800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:45464200-45469800	Weak transcription	Osteobl	bone
8	chr10:45464400-45469800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:45464600-45469200	Weak transcription	Fetal Lung	lung
10	chr10:45464600-45469400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:45464600-45469600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:45464600-45469600	Weak transcription	Fetal Brain Male	brain
13	chr10:45464600-45470000	Weak transcription	Fetal Kidney	kidney
14	chr10:45464600-45470000	Genic enhancers	Fetal Muscle Trunk	muscle
15	chr10:45464800-45469400	Genic enhancers	Primary monocytes fromperipheralblood	blood
16	chr10:45464800-45469800	Weak transcription	NHLF	lung
17	chr10:45464800-45470000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:45465000-45469200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr10:45465000-45469400	Weak transcription	Primary T cells from cord blood	blood
20	chr10:45465000-45469600	Weak transcription	Thymus	Thymus
21	chr10:45465000-45470200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr10:45465200-45469200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr10:45465200-45469400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:45465200-45470000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr10:45465400-45469200	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:45465400-45469600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:45465400-45469600	Weak transcription	A549	lung
28	chr10:45465600-45469600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
29	chr10:45465800-45470000	Weak transcription	Psoas Muscle	Psoas
30	chr10:45466800-45469400	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:45466800-45470200	Genic enhancers	HSMMtube	muscle
32	chr10:45467000-45470000	Genic enhancers	Fetal Muscle Leg	muscle
33	chr10:45467200-45470000	Enhancers	Right Atrium	heart
34	chr10:45467400-45469600	Weak transcription	Ovary	ovary
35	chr10:45467600-45469400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:45467600-45469400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:45467600-45469600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:45467600-45469600	Weak transcription	Fetal Brain Female	brain
39	chr10:45467800-45469400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr10:45467800-45469600	Weak transcription	Liver	Liver
41	chr10:45467800-45469600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:45467800-45470400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr10:45468000-45469200	Genic enhancers	Brain Hippocampus Middle	brain
44	chr10:45468000-45469600	Weak transcription	HepG2	liver
45	chr10:45468000-45470000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr10:45468000-45471800	Enhancers	Fetal Heart	heart
47	chr10:45468200-45469200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:45468200-45469800	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr10:45468200-45469800	Enhancers	Primary B cells from peripheral blood	blood
50	chr10:45468200-45470000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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