Variant report

Variant	rs61270966
Chromosome Location	chr3:141470509-141470510
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141463636..141467792-chr3:141468561..141470985,4	K562	blood:
2	chr3:141463289..141465485-chr3:141469694..141472541,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114125	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1055690	0.84[ASN][1000 genomes]
rs1980190	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6440034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769676	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776205	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73000305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7635763	0.84[ASN][1000 genomes]
rs9789997	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141458800-141470800	Weak transcription	Stomach Mucosa	stomach
2	chr3:141459600-141470800	Weak transcription	Fetal Brain Male	brain
3	chr3:141460400-141472400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr3:141461000-141471600	Strong transcription	Fetal Thymus	thymus
5	chr3:141461400-141471800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr3:141461600-141471400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:141461800-141498200	Weak transcription	Right Ventricle	heart
8	chr3:141462200-141470800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:141462200-141473200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:141462400-141472000	Weak transcription	Brain Angular Gyrus	brain
11	chr3:141462600-141471400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:141463200-141472400	Strong transcription	Fetal Muscle Trunk	muscle
13	chr3:141463800-141472000	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr3:141463800-141472600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:141465000-141481400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:141465800-141472000	Strong transcription	Thymus	Thymus
17	chr3:141466000-141473000	Weak transcription	K562	blood
18	chr3:141466200-141470600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:141466200-141471000	Weak transcription	Brain Substantia Nigra	brain
20	chr3:141466200-141471200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr3:141466200-141472000	Weak transcription	NHLF	lung
22	chr3:141466200-141473000	Weak transcription	NHDF-Ad	bronchial
23	chr3:141466200-141474400	Weak transcription	Primary B cells from cord blood	blood
24	chr3:141466200-141475800	Weak transcription	Psoas Muscle	Psoas
25	chr3:141466400-141470600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr3:141466400-141470800	Weak transcription	HSMMtube	muscle
27	chr3:141466400-141472200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr3:141466600-141470800	Weak transcription	Gastric	stomach
29	chr3:141466600-141472200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:141466600-141472400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr3:141466600-141472600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr3:141466600-141475200	Weak transcription	Esophagus	oesophagus
33	chr3:141466800-141470800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr3:141466800-141471200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr3:141466800-141473600	Weak transcription	Brain Anterior Caudate	brain
36	chr3:141467000-141471000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr3:141467000-141471200	Weak transcription	Left Ventricle	heart
38	chr3:141467000-141471400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:141467000-141471400	Weak transcription	HUVEC	blood vessel
40	chr3:141467000-141471600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:141467000-141471600	Weak transcription	Pancreas	Pancrea
42	chr3:141467000-141472600	Weak transcription	HMEC	breast
43	chr3:141467000-141473000	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr3:141467000-141473400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr3:141467000-141474000	Weak transcription	Aorta	Aorta
46	chr3:141467000-141474400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr3:141467000-141474800	Weak transcription	Spleen	Spleen
48	chr3:141467000-141477000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr3:141467000-141481600	Weak transcription	Lung	lung
50	chr3:141467000-141483400	Weak transcription	Fetal Lung	lung

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