Variant report

Variant	rs61271738
Chromosome Location	chr6:37940278-37940279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11755592	1.00[ASN][1000 genomes]
rs17648426	1.00[ASN][1000 genomes]
rs2036124	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv602956	chr6:37909084-37986489	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2761037	chr6:37930659-37966762	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37922800-37957600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:37922800-37958600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:37923600-37942200	Weak transcription	Aorta	Aorta
4	chr6:37923600-37947400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:37924600-37941600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:37926800-37955000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:37927000-37942400	Weak transcription	Psoas Muscle	Psoas
8	chr6:37927200-37942400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:37929400-37942000	Weak transcription	Esophagus	oesophagus
10	chr6:37929400-37947800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:37929400-37953200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:37930200-37941600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:37930200-37942200	Weak transcription	HepG2	liver
14	chr6:37930600-37941800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:37934400-37940600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:37934400-37949800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:37934800-37947400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:37935000-37942400	Weak transcription	HSMM	muscle
19	chr6:37935000-37942400	Weak transcription	NHDF-Ad	bronchial
20	chr6:37935000-37947000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:37935200-37942400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:37935200-37942400	Weak transcription	A549	lung
23	chr6:37935200-37947000	Weak transcription	NHEK	skin
24	chr6:37936400-37941600	Weak transcription	Primary B cells from cord blood	blood
25	chr6:37936600-37941200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:37936600-37947400	Weak transcription	Left Ventricle	heart
27	chr6:37938200-37940400	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr6:37938600-37941400	Enhancers	Dnd41	blood
29	chr6:37938600-37941800	Enhancers	Fetal Lung	lung
30	chr6:37938800-37940400	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr6:37938800-37940400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr6:37939000-37940400	Enhancers	Colon Smooth Muscle	Colon
33	chr6:37939000-37940400	Enhancers	Small Intestine	intestine
34	chr6:37939000-37941600	Enhancers	Primary hematopoietic stem cells	blood
35	chr6:37939000-37941800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:37939200-37941200	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr6:37939200-37941600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:37939200-37941800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr6:37939400-37940400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr6:37939400-37940400	Enhancers	HSMMtube	muscle
41	chr6:37939400-37940800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:37939400-37941000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr6:37939400-37942600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:37939400-37942600	Weak transcription	Fetal Heart	heart
45	chr6:37939400-37947400	Weak transcription	Ovary	ovary
46	chr6:37939600-37940800	Weak transcription	Fetal Stomach	stomach
47	chr6:37939600-37941000	Enhancers	GM12878-XiMat	blood
48	chr6:37939600-37942400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr6:37939800-37940800	Enhancers	Pancreatic Islets	Pancreatic Islet
50	chr6:37939800-37942000	Weak transcription	Fetal Muscle Leg	muscle

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