Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1125961	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs159080	0.82[ASN][1000 genomes]
rs17267366	0.95[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs2022186	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs288829	0.86[JPT][hapmap]
rs34132013	0.97[ASN][1000 genomes]
rs34395355	0.85[ASN][1000 genomes]
rs365610	0.81[EUR][1000 genomes]
rs366808	0.84[CEU][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs373968	0.86[JPT][hapmap]
rs392646	0.86[JPT][hapmap]
rs430767	0.86[JPT][hapmap]
rs431022	0.81[EUR][1000 genomes]
rs4426578	0.83[ASN][1000 genomes]
rs4811547	0.82[TSI][hapmap]
rs6023655	0.89[CEU][hapmap];0.91[TSI][hapmap]
rs6069016	0.89[CEU][hapmap]
rs6123426	0.89[CEU][hapmap]
rs6123433	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6127331	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6127333	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6127334	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71196476	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7263291	0.80[TSI][hapmap]
rs733093	0.80[TSI][hapmap]
rs912507	0.84[CEU][hapmap]
rs912510	0.89[CEU][hapmap]
rs912512	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
2	nsv1064144	chr20:53175264-53750137	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv544302	chr20:53175264-53750137	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv1060552	chr20:53234716-53655115	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	esv1814522	chr20:53592333-53604668	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6127345	PFDN4	cis	cerebellum	SCAN
rs6127345	ATP9A	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53592200-53592600	Enhancers	Adipose Nuclei	Adipose

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