Variant report

Variant	rs61275990
Chromosome Location	chr4:95677808-95677809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr4:95677488-95681982	SK-N-SH	brain:	n/a	chr4:95679721-95679730
2	RAD21	chr4:95677635-95677890	SK-N-SH_RA	brain:	n/a	n/a
3	CTCF	chr4:95677800-95677950	HRPEpiC	eye:	n/a	n/a
4	CTCF	chr4:95677660-95677810	HRPEpiC	eye:	n/a	n/a
5	CTCF	chr4:95677720-95677870	HBMEC	blood vessel:	n/a	n/a
6	RAD21	chr4:95677342-95679343	SK-N-SH	brain:	n/a	n/a
7	CTCF	chr4:95677760-95677910	HRE	kidney:	n/a	n/a
8	E2F4	chr4:95677716-95677909	MCF10A-Er-Src	breast:	n/a	n/a
9	CTCF	chr4:95677728-95677870	HUVEC	blood vessel:	n/a	n/a
10	CTCF	chr4:95677760-95677910	MCF-7	breast:	n/a	n/a
11	CTCF	chr4:95677740-95677890	SK-N-SH_RA	brain:	n/a	n/a
12	CTCF	chr4:95677726-95677836	Medullo	brain:	n/a	n/a
13	CTCF	chr4:95677740-95677890	HCPEpiC	choroid plexus:	n/a	n/a
14	CTCF	chr4:95677800-95677950	HAc	cerebellar:	n/a	n/a
15	CTCF	chr4:95677680-95677830	HRE	kidney:	n/a	n/a
16	CTCF	chr4:95677720-95677870	HMF	breast:	n/a	n/a
17	CTCF	chr4:95677720-95677870	HA-sp	spinal cord:	n/a	n/a
18	CTCF	chr4:95677740-95677890	RPTEC	kidney:	n/a	n/a
19	RAD21	chr4:95677669-95677932	SK-N-SH_RA	brain:	n/a	n/a
20	CTCF	chr4:95677700-95677850	BE2_C	brain:	n/a	n/a
21	CTCF	chr4:95677720-95677870	HCPEpiC	choroid plexus:	n/a	n/a
22	CTCF	chr4:95677660-95677810	HUVEC	blood vessel:	n/a	n/a
23	CTCF	chr4:95677680-95677830	RPTEC	kidney:	n/a	n/a
24	CTCF	chr4:95677680-95677830	AoAF	blood vessel:	n/a	n/a
25	CTCF	chr4:95677720-95677870	HAc	cerebellar:	n/a	n/a
26	CTCF	chr4:95677680-95677830	HMEC	breast:	n/a	n/a
27	CTCF	chr4:95677720-95677870	BE2_C	brain:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95675993..95678993-chr6:26054520..26056880,3	K562	blood:

No data

Variant related genes	Relation type
BMPR1B	TF binding region
ENSG00000187837	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17022094	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv1833916	chr4:95673181-95679741	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95676000-95678200	Weak transcription	Aorta	Aorta
2	chr4:95677400-95678000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:95677400-95678000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr4:95677600-95678000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:95677800-95678000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:95677800-95678000	Enhancers	HUVEC	blood vessel
7	chr4:95677800-95678200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:95677800-95681800	Active TSS	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links