Variant report

Variant	rs61292931
Chromosome Location	chr6:33549988-33549989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33394086..33395846-chr6:33548309..33550543,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs5745582	0.94[AFR][1000 genomes]
rs5745587	0.92[AFR][1000 genomes]
rs6914422	0.88[AFR][1000 genomes]
rs6924988	0.84[AFR][1000 genomes]
rs6925471	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9296095	0.93[AFR][1000 genomes]
rs9380371	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462896	chr6:33534880-33588147	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv602833	chr6:33534880-33588147	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33548200-33551200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:33548200-33553000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:33548200-33553000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:33548400-33550000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:33548400-33551000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:33548400-33551200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:33548400-33551200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:33548400-33551200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:33548400-33551400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:33548400-33551600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:33548400-33551800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:33548400-33552600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:33548400-33552600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:33548400-33552600	Weak transcription	GM12878-XiMat	blood
15	chr6:33548400-33552800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:33548400-33552800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:33548400-33553000	Weak transcription	Primary B cells from cord blood	blood
18	chr6:33548400-33553000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:33548400-33553000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:33548400-33553000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:33548400-33553000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:33548400-33553000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:33548400-33553000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:33548400-33553000	Weak transcription	Thymus	Thymus
25	chr6:33548400-33553000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr6:33548400-33553200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:33548400-33553200	Weak transcription	Brain Angular Gyrus	brain
28	chr6:33548400-33553200	Weak transcription	HMEC	breast
29	chr6:33548400-33553400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr6:33548400-33553400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:33548400-33553400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:33548400-33553400	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:33548400-33553400	Weak transcription	Brain Substantia Nigra	brain
34	chr6:33548400-33553400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr6:33548400-33553400	Weak transcription	Fetal Brain Male	brain
36	chr6:33548400-33553400	Weak transcription	Fetal Heart	heart
37	chr6:33548400-33553400	Weak transcription	Fetal Lung	lung
38	chr6:33548400-33553400	Weak transcription	Placenta	Placenta
39	chr6:33548400-33553400	Weak transcription	HSMMtube	muscle
40	chr6:33548400-33553400	Weak transcription	HUVEC	blood vessel
41	chr6:33548400-33553400	Weak transcription	NH-A	brain
42	chr6:33548400-33553600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:33548400-33553600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:33548400-33553600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:33548400-33553600	Weak transcription	Brain Germinal Matrix	brain
46	chr6:33548400-33553600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:33548400-33553600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:33548400-33553600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr6:33548400-33557000	Weak transcription	HSMM	muscle
50	chr6:33548400-33557200	Weak transcription	NHDF-Ad	bronchial

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