Variant report

Variant	rs61298903
Chromosome Location	chr14:66218595-66218596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1003401	0.97[ASN][1000 genomes]
rs1054218	0.92[ASN][1000 genomes]
rs1950557	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1984855	0.97[ASN][1000 genomes]
rs2236067	0.96[ASN][1000 genomes]
rs35206478	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3742597	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4080329	0.97[ASN][1000 genomes]
rs4131097	0.82[EUR][1000 genomes]
rs58102398	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59853675	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60273099	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60734251	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6573625	0.97[ASN][1000 genomes]
rs67662065	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7143026	0.93[ASN][1000 genomes]
rs7148737	0.97[ASN][1000 genomes]
rs7156078	0.97[ASN][1000 genomes]
rs7158556	0.97[ASN][1000 genomes]
rs761830	0.93[ASN][1000 genomes]
rs8003811	0.93[ASN][1000 genomes]
rs968540	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
2	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66193000-66218800	Weak transcription	Colonic Mucosa	Colon
2	chr14:66201800-66219200	Weak transcription	Brain Anterior Caudate	brain
3	chr14:66209400-66219200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:66209600-66219000	Weak transcription	Thymus	Thymus
5	chr14:66209600-66219200	Weak transcription	Stomach Mucosa	stomach
6	chr14:66215600-66239800	Weak transcription	Primary T cells from cord blood	blood
7	chr14:66217400-66220200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr14:66217400-66221000	Enhancers	Fetal Intestine Small	intestine
9	chr14:66217600-66218600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr14:66217800-66218600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:66217800-66219600	Enhancers	HepG2	liver
12	chr14:66217800-66220400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr14:66218000-66219200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:66218000-66221000	Enhancers	Fetal Intestine Large	intestine
15	chr14:66218400-66218600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:66218400-66219200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr14:66218400-66219200	Weak transcription	Small Intestine	intestine
18	chr14:66218400-66220200	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links