Variant report

Variant	rs6130130
Chromosome Location	chr20:41067504-41067505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11086835	0.90[CEU][hapmap]
rs11086836	0.90[CEU][hapmap];1.00[MEX][hapmap]
rs11696790	0.90[CEU][hapmap]
rs11699471	0.88[CHB][hapmap]
rs11907033	0.90[CEU][hapmap]
rs12480171	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs12480310	0.90[CEU][hapmap]
rs12481706	0.90[CEU][hapmap];1.00[MEX][hapmap]
rs126180	0.89[CHB][hapmap]
rs230154	0.89[CHB][hapmap]
rs230158	0.89[CHB][hapmap]
rs230170	0.89[CHB][hapmap]
rs57287359	0.92[EUR][1000 genomes]
rs57370890	0.88[EUR][1000 genomes]
rs59669560	0.81[EUR][1000 genomes]
rs6030307	0.89[CHB][hapmap]
rs60573844	0.92[EUR][1000 genomes]
rs61076895	0.88[EUR][1000 genomes]
rs73121633	0.83[EUR][1000 genomes]
rs73123336	0.85[EUR][1000 genomes]
rs73123338	0.88[EUR][1000 genomes]
rs73123352	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73123354	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73123356	0.86[EUR][1000 genomes]
rs73123358	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41042000-41070000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41067200-41069800	Weak transcription	Fetal Muscle Leg	muscle
3	chr20:41067400-41069800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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