Variant report

Variant	rs61305556
Chromosome Location	chr12:51299485-51299486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11169590	0.93[EUR][1000 genomes]
rs11169620	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12311433	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12311437	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12312292	0.93[EUR][1000 genomes]
rs12317842	0.93[EUR][1000 genomes]
rs17125002	0.93[EUR][1000 genomes]
rs2579072	0.91[EUR][1000 genomes]
rs59396115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829127	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs864900	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414501	chr12:51174503-51534707	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51299200-51299800	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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