Variant report

Variant	rs61307723
Chromosome Location	chr5:79769106-79769107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79767836..79769393-chr5:79769417..79771117,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11953926	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11958178	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11959850	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58831173	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58901908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59107533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60007768	0.83[AMR][1000 genomes]
rs60317104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6882024	0.83[AMR][1000 genomes]
rs7717766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7726334	0.83[AMR][1000 genomes]
rs7734903	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1028027	chr5:79694699-79841752	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79733400-79782600	Weak transcription	NHLF	lung
2	chr5:79744800-79783200	Weak transcription	Colonic Mucosa	Colon
3	chr5:79753400-79769600	Weak transcription	HUVEC	blood vessel
4	chr5:79754600-79769600	Weak transcription	Osteobl	bone
5	chr5:79757000-79770000	Weak transcription	NHDF-Ad	bronchial
6	chr5:79757400-79769400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:79759400-79775000	Weak transcription	Hela-S3	cervix
8	chr5:79759400-79778800	Weak transcription	Small Intestine	intestine
9	chr5:79759400-79779200	Weak transcription	Lung	lung
10	chr5:79759400-79782800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:79762600-79769200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr5:79763000-79769800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:79763200-79772400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:79763200-79779600	Weak transcription	Gastric	stomach
15	chr5:79763400-79775200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr5:79764000-79771400	Strong transcription	Brain Angular Gyrus	brain
17	chr5:79764200-79775200	Weak transcription	HMEC	breast
18	chr5:79764400-79770200	Weak transcription	HepG2	liver
19	chr5:79764800-79771800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:79764800-79772000	Strong transcription	Left Ventricle	heart
21	chr5:79765000-79776000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:79765400-79770800	Weak transcription	Psoas Muscle	Psoas
23	chr5:79765600-79769200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr5:79765600-79769600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr5:79765600-79769800	Weak transcription	Brain Hippocampus Middle	brain
26	chr5:79765600-79770400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr5:79765600-79783400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr5:79766600-79769600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:79766600-79769600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr5:79766600-79769600	Weak transcription	Brain Substantia Nigra	brain
31	chr5:79766600-79769600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr5:79766600-79770400	Weak transcription	Fetal Thymus	thymus
33	chr5:79766600-79770400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr5:79766600-79770600	Weak transcription	Fetal Brain Male	brain
35	chr5:79766600-79770600	Weak transcription	NHEK	skin
36	chr5:79766600-79771800	Weak transcription	Fetal Stomach	stomach
37	chr5:79766600-79772600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr5:79766600-79773400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr5:79766600-79774400	Weak transcription	Right Ventricle	heart
40	chr5:79766600-79775000	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr5:79766600-79778000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr5:79766600-79779400	Weak transcription	Pancreas	Pancrea
43	chr5:79766600-79782600	Weak transcription	Fetal Heart	heart
44	chr5:79766600-79783400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr5:79766800-79769600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr5:79766800-79769800	Weak transcription	Brain Germinal Matrix	brain
47	chr5:79766800-79770800	Weak transcription	Colon Smooth Muscle	Colon
48	chr5:79766800-79771800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr5:79766800-79782400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr5:79766800-79782800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links