Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179553040..179558877-chr1:179559940..179564416,7	MCF-7	breast:
2	chr1:179561671..179563939-chr1:179566117..179567690,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227141	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10157829	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1079291	0.82[ASN][1000 genomes]
rs12021675	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12035247	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12042409	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12045588	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1999068	0.94[ASN][1000 genomes]
rs3765547	0.81[ASN][1000 genomes]
rs4474210	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4520380	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55635521	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58593782	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6425588	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6689426	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691856	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6692069	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6699527	0.84[EUR][1000 genomes]
rs74132225	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs744446	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7520355	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7547484	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7547988	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs61310274	TDRD5	cis	Artery Aorta	GTEx
rs61310274	TDRD5	cis	Esophagus Mucosa	GTEx
rs61310274	TDRD5	cis	Artery Tibial	GTEx
rs61310274	TDRD5	cis	Thyroid	GTEx
rs61310274	TDRD5	cis	Nerve Tibial	GTEx
rs61310274	TDRD5	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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