Variant report

Variant	rs6131532
Chromosome Location	chr20:13858773-13858774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17191186	0.81[CHB][hapmap]
rs17263416	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2064644	0.81[CHB][hapmap]
rs2273400	0.81[CHB][hapmap]
rs6131521	1.00[MEX][hapmap]
rs6131534	0.88[ASN][1000 genomes]
rs6131537	0.90[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap]
rs6134992	0.83[CHB][hapmap]
rs6135000	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs6135005	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916202	chr20:13421724-14043615	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv912689	chr20:13570331-14155881	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1059221	chr20:13589432-13977327	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13851800-13862400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr20:13854600-13859800	Enhancers	Rectal Smooth Muscle	rectum
3	chr20:13854600-13860000	Enhancers	Fetal Stomach	stomach
4	chr20:13855800-13859800	Enhancers	Stomach Smooth Muscle	stomach
5	chr20:13855800-13862800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr20:13856800-13862800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr20:13857200-13862400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr20:13857200-13862800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr20:13858000-13859200	Enhancers	Colon Smooth Muscle	Colon
10	chr20:13858200-13858800	Enhancers	Brain Cingulate Gyrus	brain
11	chr20:13858200-13859400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr20:13858200-13859400	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr20:13858400-13858800	Enhancers	Brain Anterior Caudate	brain
14	chr20:13858600-13858800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr20:13858600-13858800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr20:13858600-13859000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr20:13858600-13859000	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr20:13858600-13859400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr20:13858600-13859400	Enhancers	Brain Angular Gyrus	brain
20	chr20:13858600-13859400	Enhancers	Fetal Kidney	kidney

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