Variant report

Variant	rs6131842
Chromosome Location	chr20:16545042-16545043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16543017..16545417-chr20:16553872..16556137,2	K562	blood:

Variant related genes	Relation type
ENSG00000089177	Chromatin interaction

rs_ID	r²[population]
rs6131843	0.86[AFR][1000 genomes]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
2	chr20:16511600-16549000	Weak transcription	Colonic Mucosa	Colon
3	chr20:16534600-16553600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr20:16536000-16551400	Weak transcription	Right Ventricle	heart
5	chr20:16537000-16548800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr20:16537200-16549200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr20:16537200-16552000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr20:16537400-16545400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr20:16537400-16545400	Weak transcription	Pancreas	Pancrea
10	chr20:16537400-16550200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr20:16537400-16551200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr20:16537400-16553400	Weak transcription	Aorta	Aorta
13	chr20:16537600-16545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr20:16537600-16551400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr20:16537600-16551400	Weak transcription	Esophagus	oesophagus
16	chr20:16537600-16551800	Weak transcription	Adipose Nuclei	Adipose
17	chr20:16538400-16546800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr20:16538400-16550600	Weak transcription	NHEK	skin
19	chr20:16539000-16546200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr20:16539200-16551400	Weak transcription	Lung	lung
21	chr20:16539400-16549800	Weak transcription	Fetal Intestine Small	intestine
22	chr20:16541000-16548800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr20:16541800-16551800	Weak transcription	Left Ventricle	heart
24	chr20:16543200-16551400	Weak transcription	Psoas Muscle	Psoas
25	chr20:16543400-16546000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr20:16544200-16552600	Weak transcription	A549	lung
27	chr20:16544400-16549600	Weak transcription	HepG2	liver
28	chr20:16544400-16553000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr20:16544600-16549800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr20:16544600-16549800	Weak transcription	Fetal Kidney	kidney
31	chr20:16544600-16553000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr20:16544800-16545800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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