Variant report

Variant	rs61335247
Chromosome Location	chr6:133561224-133561225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr6:133561142-133561269	SH-SY5Y	brain:	n/a	chr6:133561227-133561248
2	STAT3	chr6:133560943-133561279	MCF10A-Er-Src	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:133561224-133561274	BE2_C	brain:	n/a
2	chr6:133561224-133561274	K562	blood:	n/a
3	chr6:133561224-133561274	HUVEC	blood vessel:	n/a
4	chr6:133561224-133561274	GM12878	blood:	n/a
5	chr6:133561224-133561274	GM19239	blood:	n/a
6	chr6:133561224-133561274	ECC-1	luminal epithelium:	n/a
7	chr6:133561224-133561274	GM06990	blood:	n/a
8	chr6:133561224-133561274	SK-N-SH	brain:	n/a
9	chr6:133561224-133561274	HepG2	liver:	n/a
10	chr6:133561224-133561274	PrEC	prostate:	n/a
11	chr6:133561224-133561274	NT2-D1	testis:	n/a
12	chr6:133561224-133561274	NH-A	brain:	n/a
13	chr6:133561224-133561274	HEEpiC	esophagus:	n/a
14	chr6:133561224-133561274	HRPEpiC	eye:	n/a
15	chr6:133561224-133561274	AG10803	skin:	n/a
16	chr6:133561224-133561274	MCF-7	breast:	n/a
17	chr6:133561224-133561274	A549	lung:	n/a
18	chr6:133561224-133561274	AoSMC	blood vessel:	n/a
19	chr6:133561224-133561274	SKMC	muscle:	n/a
20	chr6:133561224-133561274	Caco-2	colon:	n/a
21	chr6:133561224-133561274	Hela-S3	cervix:	n/a
22	chr6:133561224-133561274	HRE	kidney:	n/a
23	chr6:133561224-133561274	HMEC	breast:	n/a
24	chr6:133561224-133561274	T-47D	breast:	n/a
25	chr6:133561224-133561274	CMK	blood:	n/a
26	chr6:133561224-133561274	IMR90	lung:	fetal
27	chr6:133561224-133561274	SK-N-MC	brain:	n/a
28	chr6:133561224-133561274	H1-hESC	embryonic stem cell:	embryo
29	chr6:133561224-133561274	Jurkat	blood:	n/a
30	chr6:133561224-133561274	SK-N-SH_RA	brain:	n/a
31	chr6:133561224-133561274	HRCEpiC	kidney:	n/a
32	chr6:133561224-133561274	AG04449	skin:	fetal
33	chr6:133561224-133561274	HPAEpiC	pulmonary alveolar:	n/a
34	chr6:133561224-133561274	HAEpiC	amniotic membrane:	n/a
35	chr6:133561224-133561274	HCT-116	colon:	n/a
36	chr6:133561224-133561274	NB4	blood:	n/a
37	chr6:133561224-133561274	AG09309	skin:	n/a
38	chr6:133561224-133561274	MCF10A-Er-Src	breast:	n/a
39	chr6:133561224-133561274	HEK293	kidney:	embryo
40	chr6:133561224-133561274	U87	brain:	n/a
41	chr6:133561224-133561274	GM12892	blood:	n/a
42	chr6:133561224-133561274	PANC-1	pancreas:	n/a
43	chr6:133561224-133561274	NHBE	bronchial:	n/a
44	chr6:133561224-133561274	ProgFib	skin:	n/a
45	chr6:133561224-133561274	HIPEpiC	eye:	n/a
46	chr6:133561224-133561274	LNCaP	prostate:	n/a
47	chr6:133561224-133561274	PFSK-1	brain:	n/a
48	chr6:133561224-133561274	HL-60	blood:	n/a
49	chr6:133561224-133561274	HCPEpiC	choroid plexus:	n/a
50	chr6:133561224-133561274	AG04450	lung:	fetal

No data

Variant related genes	Relation type
EYA4	TF binding region
EYA4	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6922463	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470862	chr6:133492507-133600402	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv886678	chr6:133550279-133631190	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv5483	chr6:133554303-133599338	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133559400-133561400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:133560800-133561400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr6:133560800-133561400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr6:133560800-133561600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:133560800-133562000	Bivalent Enhancer	Fetal Heart	heart
6	chr6:133561000-133561400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr6:133561000-133561400	Flanking Active TSS	A549	lung
8	chr6:133561200-133561400	Bivalent Enhancer	Fetal Kidney	kidney
9	chr6:133561200-133561400	Flanking Active TSS	Hela-S3	cervix
10	chr6:133561200-133561600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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