Variant report

Variant	rs61344910
Chromosome Location	chr11:102470743-102470744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11225339	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116339	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984055	0.84[ASN][1000 genomes]
rs7934692	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939183	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102464000-102470800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:102466800-102474200	Enhancers	HepG2	liver
3	chr11:102467600-102470800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:102469000-102471600	Enhancers	Fetal Intestine Large	intestine
5	chr11:102469200-102471600	Enhancers	NHDF-Ad	bronchial
6	chr11:102469200-102471800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:102469200-102471800	Enhancers	Stomach Mucosa	stomach
8	chr11:102469200-102475800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:102469200-102476200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:102469400-102471400	Enhancers	Fetal Intestine Small	intestine
11	chr11:102469400-102471600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:102469400-102471600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr11:102469400-102471800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:102469400-102473400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:102469600-102471000	Enhancers	GM12878-XiMat	blood
16	chr11:102469800-102474400	Weak transcription	Pancreas	Pancrea
17	chr11:102470000-102471000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:102470000-102471200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:102470000-102472400	Enhancers	HSMMtube	muscle
20	chr11:102470000-102476000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:102470200-102470800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:102470200-102471000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr11:102470200-102471000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:102470200-102471200	Active TSS	A549	lung
25	chr11:102470200-102472400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr11:102470400-102471000	Enhancers	K562	blood
27	chr11:102470600-102471000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:102470600-102471000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr11:102470600-102471000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:102470600-102471000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr11:102470600-102471000	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr11:102470600-102471000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:102470600-102471000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:102470600-102471000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:102470600-102471000	Enhancers	Duodenum Mucosa	Duodenum
36	chr11:102470600-102471000	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr11:102470600-102471000	Flanking Active TSS	Hela-S3	cervix
38	chr11:102470600-102471000	Flanking Active TSS	HMEC	breast
39	chr11:102470600-102471000	Flanking Active TSS	HSMM	muscle
40	chr11:102470600-102471000	Flanking Active TSS	HUVEC	blood vessel
41	chr11:102470600-102471000	Flanking Active TSS	NHEK	skin
42	chr11:102470600-102471000	Flanking Active TSS	NHLF	lung
43	chr11:102470600-102471000	Flanking Active TSS	Osteobl	bone
44	chr11:102470600-102471200	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr11:102470600-102471200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:102470600-102471200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
47	chr11:102470600-102471200	Enhancers	Small Intestine	intestine
48	chr11:102470600-102471200	Flanking Active TSS	NH-A	brain

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