Variant report

Variant	rs6134868
Chromosome Location	chr20:13394279-13394280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:13391938..13394510-chr20:13399097..13402083,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8123503	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425983	chr20:13046768-13461834	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv21228	chr20:13283535-13447810	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1062049	chr20:13347580-13477455	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv544186	chr20:13347580-13477455	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13364400-13415400	Weak transcription	Right Ventricle	heart
2	chr20:13364600-13416800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr20:13368600-13397400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr20:13369000-13411200	Strong transcription	Dnd41	blood
5	chr20:13369400-13397000	Weak transcription	Primary B cells from cord blood	blood
6	chr20:13369400-13397200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr20:13369600-13397000	Weak transcription	Fetal Thymus	thymus
8	chr20:13371400-13413600	Weak transcription	Ovary	ovary
9	chr20:13371800-13397200	Weak transcription	Primary T cells from cord blood	blood
10	chr20:13372000-13395800	Weak transcription	HepG2	liver
11	chr20:13372000-13396400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr20:13372000-13397400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr20:13372000-13397400	Weak transcription	Left Ventricle	heart
14	chr20:13372000-13397400	Weak transcription	Thymus	Thymus
15	chr20:13374200-13417200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr20:13374400-13410800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr20:13374600-13397400	Weak transcription	Fetal Intestine Small	intestine
18	chr20:13374600-13399400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr20:13374600-13405800	Weak transcription	Fetal Stomach	stomach
20	chr20:13379000-13410200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr20:13379200-13463000	Weak transcription	HSMM	muscle
22	chr20:13380800-13397600	Weak transcription	Fetal Lung	lung
23	chr20:13383200-13397400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr20:13385200-13397400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr20:13387800-13397600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr20:13390800-13397400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr20:13390800-13403000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr20:13391200-13403400	Weak transcription	Fetal Kidney	kidney
29	chr20:13391800-13394600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr20:13392200-13395000	Enhancers	NHEK	skin
31	chr20:13392200-13397400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr20:13392600-13421400	Weak transcription	Psoas Muscle	Psoas
33	chr20:13392800-13394400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr20:13392800-13395000	Enhancers	Hela-S3	cervix
35	chr20:13392800-13396000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr20:13392800-13415000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr20:13393000-13394600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr20:13393600-13396200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr20:13393800-13396200	Weak transcription	Colon Smooth Muscle	Colon
40	chr20:13393800-13396400	Weak transcription	Fetal Intestine Large	intestine
41	chr20:13393800-13397400	Weak transcription	Lung	lung
42	chr20:13393800-13411000	Weak transcription	Pancreas	Pancrea
43	chr20:13393800-13416800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr20:13394000-13394800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr20:13394000-13397400	Weak transcription	Aorta	Aorta
46	chr20:13394000-13397400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr20:13394000-13397800	Weak transcription	Placenta	Placenta
48	chr20:13394000-13398000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr20:13394000-13403000	Weak transcription	HMEC	breast
50	chr20:13394000-13415600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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