Variant report

Variant	rs61354950
Chromosome Location	chr13:51697102-51697103
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59682952	1.00[AMR][1000 genomes]
rs61962192	1.00[AMR][1000 genomes]
rs73488051	1.00[AMR][1000 genomes]
rs9316522	0.86[AFR][1000 genomes]
rs9596453	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51691800-51697400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:51692600-51697200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:51693200-51697200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:51693200-51700800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:51696600-51697400	Enhancers	HepG2	liver
6	chr13:51696600-51700200	Enhancers	Liver	Liver
7	chr13:51696800-51697200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr13:51696800-51697200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
9	chr13:51696800-51697400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr13:51696800-51697400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr13:51696800-51697600	Enhancers	Fetal Kidney	kidney
12	chr13:51696800-51697800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr13:51696800-51697800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:51696800-51700000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr13:51696800-51700400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr13:51697000-51697200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
17	chr13:51697000-51697200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr13:51697000-51697200	Enhancers	Stomach Mucosa	stomach
19	chr13:51697000-51697200	Bivalent Enhancer	Dnd41	blood
20	chr13:51697000-51697400	Enhancers	H9 Cell Line	embryonic stem cell
21	chr13:51697000-51697600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr13:51697000-51697600	Enhancers	Gastric	stomach
23	chr13:51697000-51697600	Enhancers	Pancreas	Pancrea
24	chr13:51697000-51700000	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr13:51697000-51700400	Enhancers	H1 Cell Line	embryonic stem cell
26	chr13:51697000-51700400	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr13:51697000-51700400	Enhancers	HUES6 Cell Line	embryonic stem cell

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