Variant report

Variant	rs61355037
Chromosome Location	chr1:173022595-173022596
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55936451	0.91[AFR][1000 genomes]
rs56089878	0.91[AFR][1000 genomes]
rs60825363	0.91[AFR][1000 genomes]
rs74129525	0.91[AFR][1000 genomes]
rs74129526	0.91[AFR][1000 genomes]
rs74129527	0.91[AFR][1000 genomes]
rs74129528	0.91[AFR][1000 genomes]
rs74129529	0.91[AFR][1000 genomes]
rs74129531	0.94[AFR][1000 genomes]
rs980003	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173019600-173022600	Enhancers	HMEC	breast
2	chr1:173019800-173022600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:173019800-173022600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:173019800-173022600	Enhancers	Hela-S3	cervix
5	chr1:173020000-173022600	Enhancers	Stomach Mucosa	stomach
6	chr1:173020000-173023200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:173021000-173024000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr1:173021000-173024000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:173022000-173022800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:173022000-173025600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:173022000-173027000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:173022200-173022600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:173022200-173022800	Flanking Active TSS	NHEK	skin
14	chr1:173022200-173025400	Weak transcription	Fetal Lung	lung
15	chr1:173022400-173031000	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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