Variant report

Variant	rs6135642
Chromosome Location	chr20:16001318-16001319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1885944	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1885945	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57203408	0.97[EUR][1000 genomes]
rs6131764	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6135632	0.85[ASN][1000 genomes]
rs6135640	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6135644	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67294218	1.00[EUR][1000 genomes]
rs67859218	1.00[EUR][1000 genomes]
rs775100	0.96[EUR][1000 genomes]
rs796505	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1065548	chr20:15971797-16023086	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15979000-16004200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15997000-16002400	Strong transcription	Primary B cells from cord blood	blood
3	chr20:15998000-16002400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr20:15998400-16012000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:15998600-16002400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr20:15999200-16002400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr20:15999400-16002400	Enhancers	HSMM	muscle
8	chr20:15999800-16002200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr20:16000000-16002200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr20:16000000-16002400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr20:16000200-16001400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr20:16000200-16002400	Enhancers	HMEC	breast
13	chr20:16001000-16002200	Enhancers	NH-A	brain
14	chr20:16001200-16001400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr20:16001200-16002200	Enhancers	NHEK	skin
16	chr20:16001200-16002400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr20:16001200-16002400	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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