Variant report

Variant	rs6135745
Chromosome Location	chr20:16371603-16371604
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16366205..16369205-chr20:16369449..16372085,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12480677	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1884597	0.85[JPT][hapmap]
rs1884600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144892	0.84[JPT][hapmap]
rs2144893	0.82[JPT][hapmap]
rs2144894	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2876427	0.85[JPT][hapmap]
rs4814480	0.83[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6034465	0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6034467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6111072	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6111089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6111100	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6131815	0.87[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833931	chr20:16308276-16460596	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2763223	chr20:16369733-16379705	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16316000-16384400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr20:16334000-16377400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr20:16342600-16377400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr20:16343600-16384600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr20:16344400-16380200	Weak transcription	HSMMtube	muscle
6	chr20:16344800-16377400	Weak transcription	Brain Angular Gyrus	brain
7	chr20:16345000-16391200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr20:16345400-16377400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr20:16345400-16391000	Weak transcription	Brain Germinal Matrix	brain
10	chr20:16346600-16393600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr20:16347600-16392000	Weak transcription	Fetal Kidney	kidney
12	chr20:16348400-16383600	Weak transcription	Small Intestine	intestine
13	chr20:16349000-16371800	Weak transcription	Stomach Mucosa	stomach
14	chr20:16349200-16380000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr20:16349600-16372200	Weak transcription	Colonic Mucosa	Colon
16	chr20:16349600-16376400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr20:16349800-16381600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr20:16350000-16384000	Weak transcription	HepG2	liver
19	chr20:16350000-16384200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr20:16350600-16375000	Weak transcription	Colon Smooth Muscle	Colon
21	chr20:16350800-16384200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr20:16353000-16384200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr20:16355000-16377400	Weak transcription	Psoas Muscle	Psoas
24	chr20:16355400-16380400	Weak transcription	A549	lung
25	chr20:16355400-16385200	Weak transcription	Brain Substantia Nigra	brain
26	chr20:16355600-16377400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr20:16356000-16384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr20:16356200-16380000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr20:16356800-16372000	Weak transcription	NHEK	skin
30	chr20:16357200-16383600	Weak transcription	Brain Anterior Caudate	brain
31	chr20:16357800-16385400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr20:16359800-16387800	Weak transcription	Placenta	Placenta
33	chr20:16360400-16377200	Weak transcription	Fetal Lung	lung
34	chr20:16360600-16377600	Weak transcription	Fetal Stomach	stomach
35	chr20:16360600-16378400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr20:16360600-16380200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr20:16360600-16382400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr20:16360600-16385200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr20:16360800-16376800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr20:16360800-16380000	Weak transcription	Brain Hippocampus Middle	brain
41	chr20:16360800-16385000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr20:16360800-16385200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr20:16361000-16377800	Weak transcription	Right Ventricle	heart
44	chr20:16361000-16380400	Weak transcription	Liver	Liver
45	chr20:16361000-16381200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr20:16361600-16372200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr20:16364600-16385400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr20:16364800-16379800	Weak transcription	Gastric	stomach
49	chr20:16365000-16377600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr20:16365400-16372000	Weak transcription	Primary T cells from cord blood	blood

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