The 2.0 version of rSNPBase

Variant report

Variant rs6135774
Chromosome Location chr20:16493471-16493472
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16431400-16508200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr20:16449400-16500600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr20:16453600-16508200 Weak transcription Stomach Mucosa stomach
4 chr20:16463000-16498000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr20:16463800-16495000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr20:16467000-16508800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr20:16467400-16500800 Weak transcription HUES6 Cell Line embryonic stem cell
8 chr20:16467400-16507000 Weak transcription ES-I3 Cell Line embryonic stem cell
9 chr20:16467800-16494600 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr20:16469600-16507600 Weak transcription HSMMtube muscle
11 chr20:16469800-16496800 Weak transcription Brain Angular Gyrus brain
12 chr20:16470200-16508600 Weak transcription NHLF lung
13 chr20:16470800-16496600 Weak transcription Fetal Brain Female brain
14 chr20:16472800-16517400 Weak transcription Primary hematopoietic stem cells short term culture blood
15 chr20:16475000-16505800 Weak transcription Primary T regulatory cells fromperipheralblood blood
16 chr20:16478000-16500600 Weak transcription H1 Cell Line embryonic stem cell
17 chr20:16480600-16509400 Weak transcription K562 blood
18 chr20:16482600-16507200 Weak transcription HSMM muscle
19 chr20:16483000-16494000 Weak transcription Primary neutrophils fromperipheralblood blood
20 chr20:16483800-16493800 Strong transcription Duodenum Mucosa Duodenum
21 chr20:16483800-16493800 Strong transcription Rectal Mucosa Donor 29 rectum
22 chr20:16483800-16494000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr20:16484000-16493800 Strong transcription Rectal Mucosa Donor 31 rectum
24 chr20:16485200-16500600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr20:16485200-16508600 Weak transcription Pancreatic Islets Pancreatic Islet
26 chr20:16485600-16508000 Weak transcription Primary T cells fromperipheralblood blood
27 chr20:16485800-16501000 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr20:16485800-16521200 Weak transcription Right Ventricle heart
29 chr20:16488400-16494600 Weak transcription GM12878-XiMat blood
30 chr20:16488600-16493800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr20:16488600-16496200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr20:16488600-16507000 Weak transcription Muscle Satellite Cultured Cells --
33 chr20:16488600-16507200 Weak transcription Primary T killer naive cells fromperipheralblood blood
34 chr20:16488600-16507200 Weak transcription Osteobl bone
35 chr20:16488800-16494800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr20:16488800-16496200 Weak transcription Brain Cingulate Gyrus brain
37 chr20:16488800-16508800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr20:16488800-16509200 Weak transcription Small Intestine intestine
39 chr20:16489000-16496600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
40 chr20:16489000-16507200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr20:16489000-16511000 Weak transcription Colonic Mucosa Colon
42 chr20:16489200-16495800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
43 chr20:16489200-16500800 Weak transcription iPS-20b Cell Line embryonic stem cell
44 chr20:16489200-16507000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr20:16489200-16508600 Weak transcription HepG2 liver
46 chr20:16489200-16512200 Weak transcription Gastric stomach
47 chr20:16489200-16521000 Weak transcription Spleen Spleen
48 chr20:16489400-16496800 Weak transcription Fetal Intestine Small intestine
49 chr20:16489400-16499200 Weak transcription A549 lung
50 chr20:16489400-16500400 Weak transcription Fetal Stomach stomach

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015