Variant report

Variant	rs6135801
Chromosome Location	chr20:16556133-16556134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:16554949-16556346	HepG2	liver:	n/a	n/a
2	KAP1	chr20:16555136-16556386	U2OS	brain:	n/a	n/a
3	MAX	chr20:16555303-16556175	K562	blood:	n/a	chr20:16555920-16555927 chr20:16555918-16555928
4	EP300	chr20:16555328-16556355	K562	blood:	n/a	n/a
5	POLR2A	chr20:16555206-16556466	Raji	blood:	n/a	n/a
6	MAX	chr20:16554937-16556356	A549	lung:	n/a	chr20:16555920-16555927 chr20:16555918-16555928
7	TCF12	chr20:16554999-16556182	A549	lung:	n/a	chr20:16555434-16555444
8	WRNIP1	chr20:16555910-16556397	GM12878	blood:	n/a	n/a
9	TBL1XR1	chr20:16555454-16556244	K562	blood:	n/a	n/a
10	MXI1	chr20:16555533-16556140	H1-hESC	embryonic stem cell:	n/a	n/a
11	MAX	chr20:16555202-16556289	A549	lung:	n/a	chr20:16555920-16555927 chr20:16555918-16555928
12	MAX	chr20:16555326-16556147	ECC-1	luminal epithelium:	n/a	chr20:16555920-16555927 chr20:16555918-16555928
13	HA-E2F1	chr20:16555138-16556440	MCF-7	breast:	n/a	n/a
14	MAFK	chr20:16555886-16556193	HepG2	liver:	n/a	n/a
15	SIN3A	chr20:16555389-16556294	H1-hESC	embryonic stem cell:	n/a	n/a
16	CEBPB	chr20:16555917-16556342	HepG2	liver:	n/a	n/a
17	ARID3A	chr20:16555228-16556222	HepG2	liver:	n/a	n/a
18	SRF	chr20:16555279-16556222	MCF-7	breast:	n/a	chr20:16555666-16555680 chr20:16555671-16555682 chr20:16555664-16555681 chr20:16555669-16555682 chr20:16555671-16555680 chr20:16555669-16555682 chr20:16555668-16555682 chr20:16555666-16555684 chr20:16555670-16555681 chr20:16555668-16555683
19	TBP	chr20:16555255-16556223	HepG2	liver:	n/a	n/a
20	GATA2	chr20:16555589-16556242	HUVEC	blood vessel:	n/a	chr20:16556140-16556152 chr20:16556143-16556150
21	MAX	chr20:16555349-16556182	H1-hESC	embryonic stem cell:	n/a	chr20:16555920-16555927 chr20:16555918-16555928
22	CUX1	chr20:16555363-16556190	K562	blood:	n/a	chr20:16556043-16556059
23	MAFF	chr20:16556079-16556451	K562	blood:	n/a	n/a
24	POLR2A	chr20:16554836-16556550	HepG2	liver:	n/a	n/a
25	CHD2	chr20:16555156-16556198	GM12878	blood:	n/a	n/a
26	MAX	chr20:16555463-16556266	A549	lung:	n/a	chr20:16555920-16555927 chr20:16555918-16555928
27	MXI1	chr20:16555191-16556398	HepG2	liver:	n/a	n/a
28	MXI1	chr20:16555163-16556676	SK-N-SH	brain:	n/a	n/a
29	SIN3AK20	chr20:16555209-16556550	MCF-7	breast:	n/a	n/a
30	POLR2A	chr20:16555194-16556418	K562	blood:	n/a	n/a
31	MYBL2	chr20:16555077-16556399	HepG2	liver:	n/a	n/a
32	MAX	chr20:16555044-16556328	HepG2	liver:	n/a	chr20:16555920-16555927 chr20:16555918-16555928

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16554484..16557263-chr20:16559352..16563570,6	K562	blood:
2	chr20:16549901..16551714-chr20:16554248..16557125,2	MCF-7	breast:

Variant related genes	Relation type
KIF16B	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs6034538	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6044127	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6044135	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6044139	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6131843	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6131845	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6131846	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6131849	0.83[AFR][1000 genomes]
rs6131850	0.81[AFR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16552200-16556600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr20:16552800-16556400	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr20:16552800-16556400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr20:16553000-16556400	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr20:16553000-16556400	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr20:16553000-16557200	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr20:16553200-16556200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr20:16553200-16556400	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr20:16553200-16556400	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr20:16553200-16556600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr20:16553400-16556200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr20:16553400-16556400	Active TSS	H9 Cell Line	embryonic stem cell
13	chr20:16553600-16556200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr20:16553600-16556600	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr20:16554600-16556200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr20:16554600-16556200	Active TSS	Aorta	Aorta
17	chr20:16554600-16556400	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr20:16554600-16556400	Active TSS	Fetal Kidney	kidney
19	chr20:16554600-16556400	Enhancers	Spleen	Spleen
20	chr20:16554800-16556200	Active TSS	Colon Smooth Muscle	Colon
21	chr20:16555000-16556200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr20:16555000-16556200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr20:16555000-16556400	Flanking Active TSS	Liver	Liver
24	chr20:16555000-16556400	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr20:16555000-16556400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
26	chr20:16555000-16556400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr20:16555000-16556400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr20:16555000-16556600	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr20:16555200-16556200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr20:16555200-16556200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr20:16555200-16556200	Active TSS	Right Atrium	heart
32	chr20:16555200-16556400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr20:16555200-16556400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr20:16555200-16556400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr20:16555200-16556400	Flanking Active TSS	HUVEC	blood vessel
36	chr20:16555200-16556400	Flanking Active TSS	NHLF	lung
37	chr20:16555200-16556600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr20:16555200-16556600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr20:16555400-16556200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr20:16555400-16556200	Active TSS	iPS-18 Cell Line	embryonic stem cell
41	chr20:16555400-16556200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr20:16555400-16556200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr20:16555400-16556200	Active TSS	Primary T cells from cord blood	blood
44	chr20:16555400-16556200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr20:16555400-16556200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr20:16555400-16556200	Active TSS	Brain Anterior Caudate	brain
47	chr20:16555400-16556200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
48	chr20:16555400-16556200	Active TSS	Colonic Mucosa	Colon
49	chr20:16555400-16556200	Active TSS	Esophagus	oesophagus
50	chr20:16555400-16556200	Flanking Active TSS	HMEC	breast

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