Variant report

Variant	rs61358745
Chromosome Location	chr7:108886849-108886850
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10231747	0.83[AMR][1000 genomes]
rs57891916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414861	1.00[AMR][1000 genomes]
rs73416833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73418843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73418899	0.83[AMR][1000 genomes]
rs73422927	0.85[AMR][1000 genomes]
rs73428506	1.00[AMR][1000 genomes]
rs73430550	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831091	chr7:108756218-108923644	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1018586	chr7:108759240-109034145	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv429794	chr7:108763098-109003574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1016803	chr7:108786402-109013227	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv539054	chr7:108786402-109013227	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv831094	chr7:108806619-108981593	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1849605	chr7:108882191-108913019	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108886200-108887400	Enhancers	NHEK	skin
2	chr7:108886400-108887000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:108886400-108887200	Enhancers	Hela-S3	cervix
4	chr7:108886400-108887200	Enhancers	NH-A	brain
5	chr7:108886400-108887400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:108886400-108887400	Enhancers	HMEC	breast
7	chr7:108886400-108887800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:108886400-108888200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:108886600-108887000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:108886600-108887000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:108886800-108887400	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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