Variant report

Variant	rs61364591
Chromosome Location	chr9:18536514-18536515
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11788108	0.91[EUR][1000 genomes]
rs11789251	0.91[EUR][1000 genomes]
rs11791689	0.91[EUR][1000 genomes]
rs11794207	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11795292	0.91[EUR][1000 genomes]
rs1341057	0.94[ASN][1000 genomes]
rs16936819	0.82[ASN][1000 genomes]
rs16936827	0.97[ASN][1000 genomes]
rs16936853	0.88[ASN][1000 genomes]
rs1856893	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1891042	0.84[ASN][1000 genomes]
rs1891043	0.84[ASN][1000 genomes]
rs2383077	0.97[ASN][1000 genomes]
rs55686384	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56083866	0.87[EUR][1000 genomes]
rs57339828	0.94[ASN][1000 genomes]
rs58417061	0.94[ASN][1000 genomes]
rs58504170	0.88[ASN][1000 genomes]
rs59401514	0.97[ASN][1000 genomes]
rs60498809	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs60993688	0.87[EUR][1000 genomes]
rs61210955	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs61681047	0.82[ASN][1000 genomes]
rs7031043	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73644234	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73644244	0.87[EUR][1000 genomes]
rs73644246	0.87[EUR][1000 genomes]
rs7469307	0.84[ASN][1000 genomes]
rs7871056	0.97[ASN][1000 genomes]
rs9775632	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv892689	chr9:18485434-18537444	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv892690	chr9:18485434-18592374	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
10	nsv428536	chr9:18512807-18667760	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
11	nsv892691	chr9:18519699-18805483	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18533200-18536800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:18533200-18541200	Strong transcription	Osteobl	bone
3	chr9:18533600-18538800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:18535000-18542400	Weak transcription	NHLF	lung
5	chr9:18535000-18542600	Weak transcription	Fetal Stomach	stomach
6	chr9:18535800-18538400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:18535800-18540200	Strong transcription	Muscle Satellite Cultured Cells	--
8	chr9:18535800-18541000	Strong transcription	NHDF-Ad	bronchial
9	chr9:18535800-18541200	Strong transcription	NH-A	brain
10	chr9:18536000-18536600	Weak transcription	HUVEC	blood vessel
11	chr9:18536000-18536800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:18536000-18542200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:18536000-18542200	Strong transcription	HSMM	muscle
14	chr9:18536200-18539000	Weak transcription	Fetal Heart	heart
15	chr9:18536200-18542800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links