Variant report

Variant	rs61373729
Chromosome Location	chr14:32937936-32937937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32936100..32938638-chr14:32940941..32943770,2	K562	blood:

Variant related genes	Relation type
ENSG00000151320	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11622624	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11625399	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11627728	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61982961	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61982962	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv901595	chr14:32928634-32961434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32931000-32941400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:32936200-32942800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr14:32936200-32942800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:32936400-32938400	Enhancers	NHEK	skin
5	chr14:32936400-32943200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:32936400-32944800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:32936600-32939400	Enhancers	Colon Smooth Muscle	Colon
8	chr14:32936600-32941800	Enhancers	HMEC	breast
9	chr14:32936800-32941200	Enhancers	Brain Anterior Caudate	brain
10	chr14:32936800-32942200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:32936800-32944000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr14:32937000-32938200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr14:32937000-32938400	Weak transcription	Brain Substantia Nigra	brain
14	chr14:32937000-32939200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr14:32937200-32939400	Weak transcription	Brain Angular Gyrus	brain
16	chr14:32937400-32938000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:32937400-32938200	Weak transcription	Aorta	Aorta
18	chr14:32937400-32938400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:32937400-32939200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:32937400-32941800	Enhancers	Hela-S3	cervix
21	chr14:32937600-32938000	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:32937600-32938000	Weak transcription	Fetal Heart	heart
23	chr14:32937600-32938400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr14:32937600-32940000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr14:32937600-32941200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr14:32937600-32941200	Enhancers	HSMMtube	muscle
27	chr14:32937600-32941400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr14:32937800-32938000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr14:32937800-32938400	Weak transcription	Fetal Lung	lung
30	chr14:32937800-32938600	Enhancers	NHDF-Ad	bronchial
31	chr14:32937800-32938800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:32937800-32940000	Enhancers	Osteobl	bone
33	chr14:32937800-32940800	Enhancers	Brain Cingulate Gyrus	brain
34	chr14:32937800-32941400	Enhancers	HSMM	muscle
35	chr14:32937800-32941600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr14:32937800-32941600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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