Variant report

Variant	rs6137611
Chromosome Location	chr20:22320492-22320493
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22319467..22321432-chr20:22664284..22666352,16	MCF-7	breast:
2	chr20:22319955..22321475-chr20:22665463..22667630,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230400	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs169232	0.86[ASN][1000 genomes]
rs6137607	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6137609	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7267431	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833942	chr20:22283122-22440749	Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22315000-22320600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22318600-22322600	Enhancers	NHEK	skin
3	chr20:22319200-22324000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr20:22319600-22322200	Enhancers	A549	lung
5	chr20:22319800-22323000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:22319800-22323000	Enhancers	HMEC	breast
7	chr20:22320000-22320600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
8	chr20:22320000-22320600	Enhancers	Fetal Lung	lung
9	chr20:22320200-22320600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr20:22320200-22320600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr20:22320200-22320600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
12	chr20:22320200-22320600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr20:22320200-22320600	Enhancers	Dnd41	blood
14	chr20:22320200-22320600	Bivalent Enhancer	HepG2	liver
15	chr20:22320200-22320800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
16	chr20:22320200-22320800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr20:22320200-22321000	Enhancers	Primary hematopoietic stem cells	blood
18	chr20:22320200-22321200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr20:22320200-22321200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr20:22320200-22323000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr20:22320200-22323000	Enhancers	HSMM	muscle
22	chr20:22320400-22320800	Enhancers	Esophagus	oesophagus
23	chr20:22320400-22321000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr20:22320400-22321200	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links