Variant report

Variant	rs61378721
Chromosome Location	chr4:151272970-151272971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151249582..151252300-chr4:151272970..151274932,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17504324	0.84[AFR][1000 genomes]
rs17504366	0.85[EUR][1000 genomes]
rs17588741	0.86[AFR][1000 genomes]
rs2055687	0.81[EUR][1000 genomes]
rs4367158	0.82[EUR][1000 genomes]
rs56984259	0.84[EUR][1000 genomes]
rs62346991	0.86[AFR][1000 genomes]
rs62346993	0.86[AFR][1000 genomes]
rs62347036	0.85[EUR][1000 genomes]
rs7682907	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv880259	chr4:151210761-151367745	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv880260	chr4:151214038-151331191	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv830112	chr4:151243801-151431771	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61378721	LRBA	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151224200-151274800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr4:151242800-151273800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:151243000-151277000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:151243000-151277400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:151243000-151312000	Weak transcription	Primary B cells from cord blood	blood
6	chr4:151244200-151300600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:151247200-151277000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:151247800-151285200	Weak transcription	GM12878-XiMat	blood
9	chr4:151259400-151277000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:151260000-151280000	Weak transcription	Fetal Stomach	stomach
11	chr4:151262400-151311200	Weak transcription	Primary T cells from cord blood	blood
12	chr4:151264400-151275400	Weak transcription	Gastric	stomach
13	chr4:151264400-151280400	Weak transcription	Small Intestine	intestine
14	chr4:151264800-151277000	Weak transcription	Liver	Liver
15	chr4:151265000-151277000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:151265000-151277000	Weak transcription	Fetal Intestine Large	intestine
17	chr4:151265000-151278200	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:151265200-151273000	Weak transcription	K562	blood
19	chr4:151265200-151278200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:151268800-151293800	Weak transcription	Fetal Intestine Small	intestine
21	chr4:151269800-151300600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:151270400-151285200	Weak transcription	Aorta	Aorta
23	chr4:151271200-151274600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr4:151271200-151278600	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr4:151272000-151276800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr4:151272000-151293800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:151272000-151298600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:151272000-151371400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr4:151272400-151294000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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