Variant report

Variant	rs61379808
Chromosome Location	chr6:88419591-88419592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6454642	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758068	chr6:88358988-88441473	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2759454	chr6:88358988-88441473	Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88412800-88432600	Weak transcription	Brain Angular Gyrus	brain
2	chr6:88413000-88421600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:88413200-88424200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:88415400-88419800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:88417200-88419800	Weak transcription	K562	blood
6	chr6:88417200-88423400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:88417200-88424000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:88417400-88421800	Weak transcription	A549	lung
9	chr6:88417400-88424000	Weak transcription	HSMM	muscle
10	chr6:88418200-88424000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:88418400-88419600	Weak transcription	GM12878-XiMat	blood
12	chr6:88418400-88423800	Weak transcription	Osteobl	bone
13	chr6:88418600-88424000	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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