Variant report

Variant	rs61384492
Chromosome Location	chr6:13730706-13730707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs204233	0.81[AMR][1000 genomes]
rs204235	0.81[AMR][1000 genomes]
rs204239	0.82[AMR][1000 genomes]
rs204240	0.81[AMR][1000 genomes]
rs204242	0.82[AMR][1000 genomes]
rs59313939	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv883452	chr6:13704341-13733565	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13724600-13733000	Weak transcription	K562	blood
2	chr6:13728200-13730800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:13728400-13731200	Enhancers	NHEK	skin
4	chr6:13729000-13731200	Enhancers	HMEC	breast
5	chr6:13729000-13731800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:13729200-13731200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:13729200-13731600	Enhancers	NHDF-Ad	bronchial
8	chr6:13729400-13731200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:13729400-13731600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:13729600-13731000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:13729600-13731600	Enhancers	NHLF	lung
12	chr6:13729600-13733400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:13729800-13731400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:13730200-13733000	Weak transcription	Placenta	Placenta
15	chr6:13730200-13733400	Weak transcription	Esophagus	oesophagus
16	chr6:13730600-13733200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:13730600-13733200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:13730600-13733200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:13730600-13733200	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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