Variant report

Variant	rs61385996
Chromosome Location	chr8:67141262-67141263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs60287744	0.83[AMR][1000 genomes]
rs61394779	1.00[AMR][1000 genomes]
rs73691504	1.00[AMR][1000 genomes]
rs73693948	1.00[AMR][1000 genomes]
rs73693949	1.00[AMR][1000 genomes]
rs73693953	1.00[AMR][1000 genomes]
rs73693955	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693956	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv3343837	chr8:67137447-67168780	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3327342	chr8:67137447-67171527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67140000-67141800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:67140000-67141800	Enhancers	Placenta	Placenta
3	chr8:67140200-67141600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:67140200-67142000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:67140600-67141600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr8:67140600-67141600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:67140600-67141600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:67140600-67141600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:67140600-67141600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:67140600-67141600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:67140600-67141600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr8:67140600-67141600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:67140600-67141800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:67140600-67141800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:67140600-67141800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr8:67140800-67141400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:67141200-67141600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr8:67141200-67141600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:67141200-67141600	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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