Variant report

Variant	rs61386275
Chromosome Location	chr10:93127013-93127014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58092050	0.91[AMR][1000 genomes]
rs58377848	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60829821	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150658	1.00[AMR][1000 genomes]
rs7908999	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7919744	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975077	chr10:93126653-93133345	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93113800-93136600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:93126200-93127200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:93126200-93127400	Enhancers	HUVEC	blood vessel
4	chr10:93126400-93127200	Enhancers	Fetal Brain Male	brain
5	chr10:93126400-93127600	Enhancers	Fetal Heart	heart
6	chr10:93126400-93128000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:93126400-93128000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr10:93126400-93128000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr10:93126400-93128600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:93126600-93127200	Enhancers	Fetal Brain Female	brain
11	chr10:93126600-93127400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:93126600-93127800	Enhancers	HSMM	muscle
13	chr10:93126800-93127600	Enhancers	HSMMtube	muscle
14	chr10:93126800-93130200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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