Variant report

Variant	rs61387584
Chromosome Location	chr2:101176148-101176149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12151415	0.90[ASN][1000 genomes]
rs12613930	0.81[AMR][1000 genomes]
rs2309849	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2946595	0.92[ASN][1000 genomes]
rs3748929	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56242838	0.82[EUR][1000 genomes]
rs57152574	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59729787	0.90[ASN][1000 genomes]
rs6716167	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6728833	0.88[ASN][1000 genomes]
rs6728834	0.90[ASN][1000 genomes]
rs6730933	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6731795	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv916792	chr2:101021066-101525200	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv582532	chr2:101029002-101531943	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv834312	chr2:101044438-101238166	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:101171600-101177000	Weak transcription	GM12878-XiMat	blood
2	chr2:101171800-101178400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:101172000-101176800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:101172000-101177000	Weak transcription	Primary T cells from cord blood	blood
5	chr2:101172000-101177000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:101172200-101177200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr2:101172200-101177200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:101172200-101177200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr2:101172400-101177800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr2:101172600-101177200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr2:101173200-101177800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr2:101173400-101177000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr2:101173400-101177600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr2:101174000-101177800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr2:101174000-101178000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr2:101174600-101178400	Weak transcription	HSMMtube	muscle
17	chr2:101175800-101176200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr2:101175800-101177800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr2:101176000-101176200	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links