Variant report

Variant	rs61394267
Chromosome Location	chr8:2151701-2151702
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17064900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56858045	0.94[AFR][1000 genomes]
rs58765635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59314722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59445991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60142569	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73559857	0.97[AFR][1000 genomes]
rs73559865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2145800-2153400	Enhancers	Primary T cells from cord blood	blood
2	chr8:2146200-2152800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:2150000-2152000	Enhancers	Fetal Thymus	thymus
4	chr8:2150200-2151800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr8:2150600-2151800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
6	chr8:2150600-2151800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr8:2151000-2151800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr8:2151000-2151800	Enhancers	Thymus	Thymus
9	chr8:2151200-2151800	Enhancers	Psoas Muscle	Psoas
10	chr8:2151200-2155400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr8:2151400-2151800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr8:2151400-2151800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
13	chr8:2151400-2151800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
14	chr8:2151600-2151800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr8:2151600-2151800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr8:2151600-2151800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr8:2151600-2151800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr8:2151600-2153200	Weak transcription	Pancreas	Pancrea
19	chr8:2151600-2166800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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