Variant report

Variant	rs61396940
Chromosome Location	chr6:56447532-56447533
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4413617	0.91[AFR][1000 genomes]
rs4520018	0.91[AFR][1000 genomes]
rs57183853	1.00[AFR][1000 genomes]
rs57439200	1.00[AFR][1000 genomes]
rs57936670	0.91[AFR][1000 genomes]
rs58912662	0.91[AFR][1000 genomes]
rs59493539	0.91[AFR][1000 genomes]
rs59643604	0.91[AFR][1000 genomes]
rs59801210	0.91[AFR][1000 genomes]
rs60143048	1.00[AFR][1000 genomes]
rs60172134	0.91[AFR][1000 genomes]
rs60304191	0.91[AFR][1000 genomes]
rs7753074	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv885912	chr6:56327849-56458836	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56408200-56496000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:56413800-56458400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:56417000-56516400	Weak transcription	Pancreas	Pancrea
4	chr6:56417200-56462000	Weak transcription	Lung	lung
5	chr6:56417200-56481400	Weak transcription	Esophagus	oesophagus
6	chr6:56417800-56454200	Weak transcription	Psoas Muscle	Psoas
7	chr6:56417800-56455400	Weak transcription	Gastric	stomach
8	chr6:56420400-56457400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:56420600-56454000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:56420600-56455400	Weak transcription	Aorta	Aorta
11	chr6:56423800-56456200	Weak transcription	Brain Substantia Nigra	brain
12	chr6:56426400-56455600	Weak transcription	Placenta	Placenta
13	chr6:56431200-56455400	Weak transcription	Ovary	ovary
14	chr6:56431400-56454200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:56431400-56455400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:56431400-56455400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:56431400-56455400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:56431400-56456800	Weak transcription	Right Ventricle	heart
19	chr6:56431600-56455400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:56431800-56453000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:56432800-56513600	Weak transcription	Small Intestine	intestine
22	chr6:56435600-56458000	Weak transcription	Fetal Brain Female	brain
23	chr6:56435800-56453000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:56436000-56453000	Weak transcription	A549	lung
25	chr6:56436400-56464800	Weak transcription	Fetal Brain Male	brain
26	chr6:56438000-56454200	Weak transcription	HMEC	breast
27	chr6:56438200-56455400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:56438200-56457800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr6:56438600-56453000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:56438800-56456000	Weak transcription	Fetal Heart	heart
31	chr6:56438800-56458400	Weak transcription	HepG2	liver
32	chr6:56440800-56465800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr6:56441000-56524800	Weak transcription	Colonic Mucosa	Colon
34	chr6:56441400-56455400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:56441600-56451400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:56441600-56455400	Weak transcription	Brain Angular Gyrus	brain
37	chr6:56441600-56455400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:56441600-56465600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:56441800-56453200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:56441800-56454000	Weak transcription	Brain Anterior Caudate	brain
41	chr6:56441800-56455400	Weak transcription	Colon Smooth Muscle	Colon
42	chr6:56441800-56455400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr6:56442200-56452800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:56442200-56453000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:56443600-56452800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:56443800-56453000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:56444000-56452800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:56444000-56453000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:56444000-56454200	Weak transcription	Brain Hippocampus Middle	brain
50	chr6:56444000-56455400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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