Variant report

Variant	rs61400028
Chromosome Location	chr2:87037173-87037174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:87037113..87040779-chr2:87041789..87043828,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11890748	0.93[AMR][1000 genomes]
rs56761572	0.93[AMR][1000 genomes]
rs59213426	0.93[AMR][1000 genomes]
rs59955770	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60553565	0.93[AMR][1000 genomes]
rs7581404	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv10063	chr2:86940988-87084360	Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1002420	chr2:86948835-87172715	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv874472	chr2:86961252-87071474	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1008817	chr2:86970406-87172715	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	esv14382	chr2:86972214-87174121	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv997982	chr2:86972834-87105864	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1007746	chr2:86972834-87172715	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv458585	chr2:86974318-87108211	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv582373	chr2:86974318-87108211	Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv1007307	chr2:86974563-87055214	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv535809	chr2:86974563-87055214	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv1004572	chr2:86975514-87082883	Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv535811	chr2:86975514-87082883	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv532319	chr2:87024867-88005418	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
16	nsv961427	chr2:87032925-87059989	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:87034000-87037400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
2	chr2:87034200-87037200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr2:87034800-87037200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
4	chr2:87035000-87037200	Flanking Bivalent TSS/Enh	Placenta	Placenta
5	chr2:87035200-87037200	Enhancers	Spleen	Spleen
6	chr2:87035400-87037200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
7	chr2:87035600-87037200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:87035600-87037200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
9	chr2:87035600-87048800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr2:87035800-87037200	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr2:87035800-87037200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:87035800-87037200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr2:87036000-87037200	Enhancers	Dnd41	blood
14	chr2:87036000-87037400	Bivalent Enhancer	Fetal Brain Male	brain
15	chr2:87036200-87037200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr2:87036200-87037200	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
17	chr2:87036200-87037200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:87036200-87037200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:87036200-87037200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
20	chr2:87036200-87038400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr2:87036200-87040200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr2:87036400-87037200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:87036400-87037400	Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr2:87036400-87037400	Bivalent Enhancer	Fetal Heart	heart
25	chr2:87036400-87037400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
26	chr2:87036400-87039200	Active TSS	Fetal Thymus	thymus
27	chr2:87036600-87037200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
28	chr2:87036600-87037200	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
29	chr2:87036600-87037200	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
30	chr2:87036600-87037200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
31	chr2:87036600-87037400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
32	chr2:87036800-87037200	Bivalent/Poised TSS	Primary hematopoietic stem cells short term culture	blood
33	chr2:87036800-87037200	Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr2:87036800-87037200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
35	chr2:87036800-87037200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
36	chr2:87036800-87037200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr2:87036800-87037200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
38	chr2:87036800-87037200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
39	chr2:87036800-87037200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
40	chr2:87036800-87037200	Bivalent Enhancer	HUVEC	blood vessel
41	chr2:87036800-87037400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr2:87037000-87037200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
43	chr2:87037000-87037200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr2:87037000-87037200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr2:87037000-87037200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
46	chr2:87037000-87037200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr2:87037000-87037200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr2:87037000-87037200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr2:87037000-87037200	Flanking Bivalent TSS/Enh	Liver	Liver
50	chr2:87037000-87037200	Bivalent/Poised TSS	Brain Germinal Matrix	brain

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