Variant report

Variant	rs61400424
Chromosome Location	chr12:42277190-42277191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17090768	0.85[AMR][1000 genomes]
rs4643129	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56234182	1.00[AMR][1000 genomes]
rs58501943	1.00[AMR][1000 genomes]
rs59262536	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077086	1.00[AMR][1000 genomes]
rs74077090	1.00[AMR][1000 genomes]
rs74077101	1.00[AMR][1000 genomes]
rs74077133	1.00[AMR][1000 genomes]
rs74077432	1.00[AMR][1000 genomes]
rs74077435	1.00[AMR][1000 genomes]
rs74079305	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899046	chr12:42271300-42291928	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42274000-42288200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:42275600-42277400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:42277000-42286200	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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