Variant report

Variant	rs61404233
Chromosome Location	chr7:138573869-138573870
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:138572835..138574537-chr7:138664228..138666151,2	MCF-7	breast:
2	chr7:138572035..138574850-chr7:138660428..138661930,2	K562	blood:
3	chr7:138503529..138506242-chr7:138573661..138576363,2	MCF-7	breast:
4	chr7:138573348..138576561-chr7:138590294..138593382,4	MCF-7	breast:
5	chr7:138573010..138575060-chr7:138577930..138580644,2	K562	blood:
6	chr7:138567501..138571817-chr7:138572093..138577716,5	MCF-7	breast:
7	chr7:138573612..138578599-chr7:138661301..138667603,11	MCF-7	breast:
8	chr7:138571012..138574283-chr7:138574631..138577144,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000122778	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12112949	1.00[AMR][1000 genomes]
rs6968601	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831154	chr7:138470488-138674113	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1027143	chr7:138480084-138992900	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv539136	chr7:138480084-138992900	Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	esv1801348	chr7:138571311-138581979	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138534600-138592400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:138536800-138583000	Weak transcription	HUVEC	blood vessel
3	chr7:138544600-138574800	Weak transcription	Spleen	Spleen
4	chr7:138545400-138597200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:138549200-138596800	Weak transcription	Aorta	Aorta
6	chr7:138553000-138592200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:138554200-138581600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:138554400-138574800	Weak transcription	Esophagus	oesophagus
9	chr7:138555400-138575400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:138555600-138578800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:138556200-138575400	Weak transcription	Ovary	ovary
12	chr7:138556200-138578400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:138558600-138575000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:138558600-138575600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:138561400-138583000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:138561800-138574200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr7:138561800-138577200	Weak transcription	HSMM	muscle
18	chr7:138562000-138575000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:138562000-138598000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:138562000-138598200	Weak transcription	HMEC	breast
21	chr7:138562600-138580600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:138566000-138574600	Weak transcription	Fetal Lung	lung
23	chr7:138566000-138574800	Weak transcription	Placenta	Placenta
24	chr7:138566000-138575400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:138566000-138583600	Weak transcription	Lung	lung
26	chr7:138566200-138574400	Weak transcription	Fetal Kidney	kidney
27	chr7:138566200-138574800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr7:138566200-138575200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr7:138566200-138575400	Weak transcription	Fetal Intestine Small	intestine
30	chr7:138566200-138578800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr7:138566200-138588200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:138566200-138606400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr7:138566400-138574200	Weak transcription	NH-A	brain
34	chr7:138566400-138575000	Weak transcription	Pancreas	Pancrea
35	chr7:138566400-138575400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr7:138566400-138575800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr7:138566400-138577600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr7:138566400-138578200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr7:138566400-138609800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr7:138566600-138575000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr7:138566600-138575800	Weak transcription	Left Ventricle	heart
42	chr7:138566600-138576600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr7:138566600-138576600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr7:138566600-138577600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr7:138566600-138592000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:138567000-138574400	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr7:138567200-138575000	Weak transcription	Fetal Brain Male	brain
48	chr7:138569000-138574600	Weak transcription	Brain Germinal Matrix	brain
49	chr7:138570600-138574200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr7:138570600-138592600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links