Variant report

Variant	rs61406777
Chromosome Location	chr14:39571207-39571208
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr14:39570718-39573407	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:39571075-39574433	HepG2	liver:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:39556842..39558862-chr14:39570996..39573006,2	MCF-7	breast:
2	chr14:39569453..39572073-chr14:39590270..39592529,2	K562	blood:
3	chr14:39559381..39561366-chr14:39570392..39572584,2	K562	blood:
4	chr14:39570644..39573336-chr14:39733309..39737125,4	MCF-7	breast:
5	chr14:39570654..39572608-chr14:39637696..39639686,2	K562	blood:
6	chr14:39570348..39574070-chr14:39637691..39640941,4	MCF-7	breast:
7	chr14:39571162..39573957-chr14:39700069..39703541,3	MCF-7	breast:
8	chr14:39569997..39574883-chr14:39575393..39578347,7	MCF-7	breast:
9	chr14:39570753..39574803-chr14:39575206..39579488,6	K562	blood:
10	chr14:39570993..39573887-chr14:39839322..39841759,2	MCF-7	breast:
11	chr14:39571044..39574449-chr14:39575206..39581914,9	K562	blood:
12	chr14:39570001..39572147-chr14:39582267..39584082,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258651	TF binding region
ENSG00000150527	Chromatin interaction
ENSG00000182400	Chromatin interaction
ENSG00000258591	Chromatin interaction
ENSG00000258941	Chromatin interaction
ENSG00000258940	Chromatin interaction
ENSG00000092208	Chromatin interaction
ENSG00000259121	Chromatin interaction
ENSG00000100934	Chromatin interaction
ENSG00000150526	Chromatin interaction
ENSG00000271424	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2415527	0.89[AFR][1000 genomes]
rs7155400	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287674	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39554800-39571600	Weak transcription	K562	blood
2	chr14:39555200-39571600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:39558800-39571400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:39560400-39571400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:39560400-39571600	Weak transcription	Esophagus	oesophagus
6	chr14:39560400-39571600	Weak transcription	Gastric	stomach
7	chr14:39561000-39571400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:39561000-39571400	Weak transcription	Psoas Muscle	Psoas
9	chr14:39561600-39571400	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:39561600-39571600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:39563400-39571600	Weak transcription	Thymus	Thymus
12	chr14:39564400-39571400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr14:39564400-39571400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:39564600-39571400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr14:39564800-39571400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr14:39565000-39571400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:39565000-39571600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:39565000-39571600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr14:39565400-39571400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr14:39565400-39571400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr14:39565400-39571400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:39565400-39571400	Weak transcription	Fetal Kidney	kidney
23	chr14:39565400-39571400	Weak transcription	Placenta	Placenta
24	chr14:39565400-39571400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:39565400-39571600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr14:39565400-39571600	Weak transcription	Ovary	ovary
27	chr14:39565600-39571400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr14:39565600-39571400	Weak transcription	NHEK	skin
29	chr14:39565600-39571600	Weak transcription	Left Ventricle	heart
30	chr14:39566200-39571400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr14:39566600-39571400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr14:39566600-39571400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr14:39566600-39571400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr14:39566600-39571400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr14:39567600-39571600	Weak transcription	Fetal Heart	heart
36	chr14:39567800-39571600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:39567800-39571600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:39568000-39571600	Weak transcription	Small Intestine	intestine
39	chr14:39568400-39571400	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr14:39568600-39571600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr14:39569200-39571600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr14:39569400-39571400	Weak transcription	Colon Smooth Muscle	Colon
43	chr14:39569600-39571400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr14:39569600-39571400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr14:39569600-39571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr14:39569600-39571400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr14:39569600-39571400	Weak transcription	GM12878-XiMat	blood
48	chr14:39569600-39571600	Enhancers	Primary T cells fromperipheralblood	blood
49	chr14:39569600-39573400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr14:39569800-39571600	Enhancers	Primary neutrophils fromperipheralblood	blood

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