Variant report

Variant	rs61414948
Chromosome Location	chr6:13230185-13230186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13229038..13230199-chr6:13278152..13279105,5	MCF-7	breast:
2	chr6:13227632..13230364-chr6:13328169..13330361,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112137	Chromatin interaction
ENSG00000145979	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57445622	1.00[AMR][1000 genomes]
rs61363396	1.00[AMR][1000 genomes]
rs73357157	1.00[AMR][1000 genomes]
rs73357174	1.00[AMR][1000 genomes]
rs73357177	1.00[AMR][1000 genomes]
rs73357197	1.00[AMR][1000 genomes]
rs73359103	1.00[AMR][1000 genomes]
rs73359145	1.00[AMR][1000 genomes]
rs73359153	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432849	chr6:13225077-13253733	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13203200-13230200	Weak transcription	Fetal Stomach	stomach
2	chr6:13208200-13239800	Weak transcription	Brain Substantia Nigra	brain
3	chr6:13208400-13230200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:13217800-13242400	Weak transcription	Pancreas	Pancrea
5	chr6:13218200-13230200	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:13218200-13235000	Weak transcription	Adipose Nuclei	Adipose
7	chr6:13218400-13241000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:13218600-13234400	Weak transcription	HSMM	muscle
9	chr6:13218800-13230200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:13223200-13232200	Weak transcription	Lung	lung
11	chr6:13224600-13231800	Weak transcription	Fetal Heart	heart
12	chr6:13227400-13232400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:13227800-13233200	Strong transcription	Left Ventricle	heart
14	chr6:13227800-13235600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:13227800-13238600	Strong transcription	Stomach Smooth Muscle	stomach
16	chr6:13227800-13240000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:13227800-13244000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:13228000-13236000	Weak transcription	Fetal Brain Male	brain
19	chr6:13228200-13230200	Enhancers	Primary T cells from cord blood	blood
20	chr6:13228200-13230200	Enhancers	Fetal Intestine Large	intestine
21	chr6:13228200-13230200	Enhancers	Fetal Intestine Small	intestine
22	chr6:13228400-13232800	Strong transcription	Brain Germinal Matrix	brain
23	chr6:13228400-13237200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:13228600-13231000	Enhancers	Primary B cells from cord blood	blood
25	chr6:13228800-13230400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr6:13228800-13230400	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr6:13228800-13230600	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr6:13228800-13231200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:13229000-13230400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:13229000-13230600	Flanking Active TSS	GM12878-XiMat	blood
31	chr6:13229200-13230400	Enhancers	Fetal Thymus	thymus
32	chr6:13229200-13240000	Weak transcription	Fetal Lung	lung
33	chr6:13229400-13230200	Enhancers	Duodenum Mucosa	Duodenum
34	chr6:13229400-13230200	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr6:13229400-13230400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr6:13229400-13230400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:13229400-13230400	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr6:13229400-13230400	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr6:13229400-13231200	Enhancers	Primary B cells from peripheral blood	blood
40	chr6:13229400-13248200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:13229600-13230200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr6:13229600-13230200	Enhancers	Liver	Liver
43	chr6:13229600-13230400	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr6:13229600-13233200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:13229600-13233200	Strong transcription	Aorta	Aorta
46	chr6:13229800-13230200	Strong transcription	Primary hematopoietic stem cells	blood
47	chr6:13229800-13230400	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr6:13229800-13230400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr6:13229800-13230600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:13229800-13230600	Enhancers	Primary neutrophils fromperipheralblood	blood

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